CMSEE Publications
2024
- Editorial: Molecular Biology of Archaea - 2022.
van Wolferen M, Ithurbide S, Santiago-Martínez MG, Charles-Orszag A
Frontiers in microbiology (2024) 15:1393932 PMC7613921 10.1038/s41564-022-01215-8 - Shining light on dinoflagellate photosystem I.
Lin S, Wu S, He J, Wang X, Grossman AR
Nature communications (2024) 15(1):3337 PMC10781511 10.1093/gbe/evad237 - WHAMM functions in kidney reabsorption and polymerizes actin to promote autophagosomal membrane closure and cargo sequestration.
Coulter AM, Cortés V, Theodore CJ, Cianciolo RE, Korstanje R, Campellone KG
Molecular biology of the cell (2024) :mbcE24010025 10.1091/mbc.E24-01-0025 - A spectral framework to map QTLs affecting joint differential networks of gene co-expression.
Hu J, Weber JN, Fuess LE, Steinel NC, Bolnick DI, Wang M
bioRxiv : the preprint server for biology (2024) : PMC5655846 10.1101/2024.03.29.587398 - Microbiome-derived acidity protects against microbial invasion in Drosophila.
Barron AJ, Agrawal S, Lesperance DNA, Doucette J, Calle S, Broderick NA
Cell reports (2024) 43(4):114087 10.1016/j.celrep.2024.114087 - Autophagosome turnover requires Arp2/3 complex-mediated maintenance of lysosomal integrity.
Theodore CJ, Wagner LH, Campellone KG
bioRxiv : the preprint server for biology (2024) : PMC10881176 10.1101/2024.03.12.584718 - In ovo probiotic supplementation supports hatchability and improves hatchling quality in broilers.
Gao M, Ren Y, Lu S, Reddyvari R, Venkitanarayanan K, Amalaradjou MA
Poultry science (2024) 103(6):103624 PMC7772711 10.1016/j.psj.2024.103624 - Multi-Omics Analysis of Gut Microbiota and Host Transcriptomics Reveal Dysregulated Immune Response and Metabolism in Young Adults with Irritable Bowel Syndrome.
Chen J, Zhao T, Li H, Xu W, Maas K, Singh V, Chen MH, Dorsey SG, Starkweather AR, Cong XS
International journal of molecular sciences (2024) 25(6): PMC3928520 10.1111/j.2517-6161.1995.tb02031.x - Dinoflagellate Proton-Pump Rhodopsin Genes in Long Island Sound: Diversity and Spatiotemporal Distribution.
Zhang H, Nulick KJ, Burris Z, Pierce M, Ma M, Lin S
Microorganisms (2024) 12(3): PMC10439184 10.3389/fmars.2019.00219 - Enhanced transport of bacteria along root systems by protists can impact plant health.
Micciulla JL, Shor LM, Gage DJ
Applied and environmental microbiology (2024) 90(4):e0201123 PMC4579469 10.1111/j.1574-6968.1986.tb01733.x - Prior exposure to pathogens augments host heterogeneity in susceptibility and has key epidemiological consequences.
Hawley DM, Pérez-Umphrey AM, Adelman JS, Fleming-Davies AE, Garrett-Larsen J, Geary SJ, Childs LM, Langwig KE
bioRxiv : the preprint server for biology (2024) : PMC25823 10.1073/pnas.2015972118 - Extracellular metallothionein as a therapeutic target in the early progression of type 1 diabetes.
Melchiorre CK, Lynes MD, Bhandari S, Su SC, Potts CM, Thees AV, Norris CE, Liaw L, Tseng YH, Lynes MA
Cell stress & chaperones (2024) 29(2):312-325 PMC3615023 10.1371/JOURNAL.PONE.0060229 - Population dynamics and bidirectional transfer of Listeria monocytogenes and Shiga toxin-producing Escherichia coli during cheese production in wooden vats.
Sun L, D'Amico DJ
Food microbiology (2024) 120:104483 10.1016/j.fm.2024.104483 - Insulin resistance before type 2 diabetes onset is associated with increased risk of albuminuria after diabetes onset: A prospective cohort study.
Willig MR, Stinson EJ, Looker HC, Piaggi P, Mitchell CM, Hanson RL, Nelson RG, Krakoff J, Chang DC
Diabetes, obesity & metabolism (2024) 26(5):1888-1896 PMC8998569 10.3390/ijms23073651 - The Role of Exercise in Statin-Associated Muscle Symptoms Outcomes: A Systematic Review and Meta-Analysis of Randomized Controlled Trials.
Mangone LA, Kwon OS, Johnson BT, Wu Y, Pescatello LS
Mayo Clinic proceedings. Innovations, quality & outcomes (2024) 8(2):131-142 PMC6465106 10.1093/eurjpc/zwad229 - Massively parallel mutant selection identifies genetic determinants of colonization of .
Miles J, Lozano GL, Rajendhran J, Stabb EV, Handelsman J, Broderick NA
mSystems (2024) 9(3):e0131723 PMC4640184 10.1016/j.celrep.2015.07.042 - WHAMM functions in kidney reabsorption and polymerizes actin to promote autophagosomal membrane closure and cargo sequestration.
Coulter AM, Cortés V, Theodore CJ, Cianciolo RE, Korstanje R, Campellone KG
bioRxiv : the preprint server for biology (2024) : PMC2763628 10.1101/2024.01.22.576497 - community transcriptomics illuminates CO-fixation potentials and supporting roles of phagotrophy and proton pump in plankton in a subtropical marginal sea.
Li H, Chen J, Yu L, Fan G, Li T, Li L, Yuan H, Wang J, Wang C, Li D, Lin S
Microbiology spectrum (2024) 12(3):e0217723 PMC5600148 10.1038/ismej.2007.70 - Evolutionary history influences the microbiomes of a female symbiotic reproductive organ in cephalopods.
Vijayan N, McAnulty SJ, Sanchez G, Jolly J, Ikeda Y, Nishiguchi MK, Réveillac E, Gestal C, Spady BL, Li DH, Burford BP, Kerwin AH, Nyholm SV
Applied and environmental microbiology (2024) 90(3):e0099023 PMC6386654 10.1073/pnas.1817322116 - Rhinoplasty Preferences: Can the Public Detect Prior Surgery on Social Media?
Valentine L, Weidman AA, Stearns SA, Dennis D, Alvarez AH, Foppiani J, Lin SJ
Aesthetic plastic surgery (2024) : 10.1007/s11606-017-4246-0 - Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees.
Wu Y, Zhang L
Journal of computational biology : a journal of computational molecular cell biology (2024) 31(4):345-359 10.1089/cmb.2023.0309 - Urban living can rescue Darwin's finches from the lethal effects of invasive vampire flies.
Knutie SA, Webster CN, Vaziri GJ, Albert L, Harvey JA, LaRue M, Verrett TB, Soldo A, Koop JAH, Chaves JA, Wegrzyn JL
Global change biology (2024) 30(1):e17145 10.1111/gcb.17145 - SAND: Automated Time-Domain Modeling of NMR Spectra Applied to Metabolite Quantification.
Wu Y, Sanati O, Uchimiya M, Krishnamurthy K, Wedell J, Hoch JC, Edison AS, Delaglio F
Analytical chemistry (2024) 96(5):1843-1851 PMC3163565 10.1186/1471-2105-12-323 - Effects and mechanisms of glyphosate as phosphorus nutrient on element stoichiometry and metabolism in the diatom .
Wang C, Li J, Li S, Lin S
Applied and environmental microbiology (2024) 90(2):e0213123 PMC6852614 10.1038/30455 - Clustered Regularly Interspaced Short Palindromic Repeat/CRISPR-Associated Protein and Its Utility All at Sea: Status, Challenges, and Prospects.
Li J, Wu S, Zhang K, Sun X, Lin W, Wang C, Lin S
Microorganisms (2024) 12(1): PMC10440436 10.3389/fmicb.2023.1205765 - Effects of spore purity on the wet heat resistance of Clostridium perfringens, Bacillus cereus and Bacillus subtilis spores.
Juneja VK, Osoria M, Altuntas EG, Taneja NK, Thakur S, Kumar GD, Setlow P
Food research international (Ottawa, Ont.) (2024) 177:113904 10.1016/j.foodres.2023.113904 - Integrative Metabolomics and Proteomics Allow the Global Intracellular Characterization of Cells and Spores.
Huang Y, Swarge BN, Roseboom W, Bleeker JD, Brul S, Setlow P, Kramer G
Journal of proteome research (2024) 23(2):596-608 PMC5122711 10.1128/microbiolspec.TBS-0019-2013 - Gene modelling and annotation for the Hawaiian bobtail squid, Euprymna scolopes.
Rogers TF, Yalçın G, Briseno J, Vijayan N, Nyholm SV, Simakov O
Scientific data (2024) 11(1):40 PMC6857279 10.1016/S0022-2836(05)80360-2 - A general approach for inferring the ancestry of recent ancestors of an admixed individual.
Zhang Y, Zhang H, Wu Y
Proceedings of the National Academy of Sciences of the United States of America (2024) 121(2):e2316242120 PMC8551421 10.1073/pnas.2316242120 - Glyphosate (Roundup) as phosphorus nutrient enhances carbon and nitrogen accumulation and up-regulates phosphorus metabolisms in the haptophyte Isochrysis galbana.
Wang C, Zhang H, Wang J, Sprecher B, Lin S
The Science of the total environment (2024) 913:169715 10.1016/j.scitotenv.2023.169715 2023
- Novel plastid genome characteristics in Fugacium kawagutii and the trend of accelerated evolution of plastid proteins in dinoflagellates.
He J, Huang Y, Li L, Lin S, Ma M, Wang Y, Lin S
Genome biology and evolution (2023) : 10.1093/gbe/evad237 - In Memoriam: Wayne Lowell Nicholson, March 26, 1958-June 8, 2023.
Foster JS, Henkin TM, Romeo T, Schuerger AC, Setlow P, Ferl RJ, Rice KC, Triplett EW, Fajardo-Cavazos P
Astrobiology (2023) 24(3):227-229 10.1089/ast.2023.0100 - Evaluation of Exercise Mobile Applications for Adults with Cardiovascular Disease Risk Factors.
Chen S, Wu Y, Bushey EL, Pescatello LS
Journal of cardiovascular development and disease (2023) 10(12): PMC7930885 10.1016/j.mayocpiqo.2020.08.005 - Multifactorial resistance of spores to low-pressure plasma sterilization.
Muratov E, Rosenbaum FP, Fuchs FM, Ulrich NJ, Awakowicz P, Setlow P, Moeller R
Applied and environmental microbiology (2023) 90(1):e0132923 PMC219731 10.1016/j.mimet.2017.01.002 - sp. nov., sp. nov., sp. nov. and sp. nov., isolated from in, and around, a rainbow trout farm.
Testerman T, Varga J, Schiffer MM, Donohue H, Vieira Da Silva C, Graf J
International journal of systematic and evolutionary microbiology (2023) 73(12): 10.1099/ijsem.0.006201 - Metabolic and transcriptional activities underlie stationary-phase sensitivity to Levofloxacin.
Hare PJ, Gonzalez JR, Quelle RM, Wu YI, Mok WWK
Microbiology spectrum (2023) 12(1):e0356723 PMC208147 10.1128/jb.173.15.4700-4706.1991 - Editorial: Improving antimicrobial peptides translational potential through peptidomimetics.
Angeles-Boza AM, Santos NC, Cardoso MH
Frontiers in microbiology (2023) 14:1304997 PMC4702905 10.1093/nar/gkv1278 - Neighboring inteins interfere with one another's homing capacity.
Turgeman-Grott I, Arsenault D, Yahav D, Feng Y, Miezner G, Naki D, Peri O, Papke RT, Gogarten JP, Gophna U
PNAS nexus (2023) 2(11):pgad354 PMC419797 10.1101/GR.849004 - Alkaline Phosphatase PhoD Mutation Induces Fatty Acid and Long-Chain Polyunsaturated Fatty Acid (LC-PUFA)-Bound Phospholipid Production in the Model Diatom .
Zhang K, Li J, Cheng J, Lin S
Marine drugs (2023) 21(11): PMC3218662 10.1093/bioinformatics/btp612 - Protocol for an agent-based model of recombination in bacteria playing a public goods game.
Lee IPA, Eldakar OT, Gogarten JP, Andam CP
STAR protocols (2023) 4(4):102733 PMC10405257 10.1016/j.xpro.2023.102733 - CD8+ T Cell-Dependent Antitumor Activity In Vivo of a Mass Spectrometry-Identified Neoepitope despite Undetectable CD8+ Immunogenicity In Vitro.
Gillig MA, Brennick CA, George MM, Balsbaugh JL, Shcheglova TV, Mandoiu II, Rosales T, Baker BM, Srivastava PK, Karandikar SH
Journal of immunology (Baltimore, Md. : 1950) (2023) 211(12):1783-91 PMC8210748 10.4049/jimmunol.2300356 - Molecular Architecture of Salmonella Typhimurium Virus P22 Genome Ejection Machinery.
Iglesias SM, Lokareddy RK, Yang R, Li F, Yeggoni DP, David Hou CF, Leroux MN, Cortines JR, Leavitt JC, Bird M, Casjens SR, White S, Teschke CM, Cingolani G
Journal of molecular biology (2023) 435(24):168365 PMC2896178 10.1016/j.jmb.2023.168365 - Locomotor effects of a fibrosis-based immune response in stickleback fish.
Matthews DG, Maciejewski MF, Wong GA, Lauder GV, Bolnick DI
The Journal of experimental biology (2023) 226(23): 10.1242/jeb.246684 - A multi-study analysis of gut microbiome data from the blue mussel (Mytilus edulis) emphasises the impact of depuration on biological interpretation.
Griffin TW, Darsan MA, Collins HI, Holohan BA, Pierce ML, Ward JE
Environmental microbiology (2023) 25(12):3435-3449 10.1111/1462-2920.16537 - 1,2-Azolylamidino ruthenium(II) complexes with DMSO ligands: electro- and photocatalysts for CO reduction.
Jennings M, Cuéllar E, Rojo A, Ferrero S, García-Herbosa G, Nganga J, Angeles-Boza AM, Martín-Alvarez JM, Miguel D, Villafañe F
Dalton transactions (Cambridge, England : 2003) (2023) 52(45):16974-16983 10.1039/d3dt01122d - HMGB2 is a potential diagnostic marker and therapeutic target for liver fibrosis and cirrhosis.
Huang Y, Liangpunsakul S, Rudraiah S, Ma J, Keshipeddy SK, Wright D, Costa A, Burgess D, Zhang Y, Huda N, Wang L, Yang Z
Hepatology communications (2023) 7(11): PMC3335123 10.1097/HC9.0000000000000299 - Cultivating Food Safety Together: Insights About the Future of Produce Safety in the U.S. Controlled Environment Agriculture Sector.
Hamilton AN, Gibson KE, Amalaradjou MA, Callahan CW, Millner PD, Ilic S, Lewis Ivey ML, Shaw AM
Journal of food protection (2023) 86(12):100190 10.1016/j.jfp.2023.100190 - Early syphilis in Guangzhou, China: presentation, molecular detection of , and genomic sequences in clinical specimens and isolates obtained by rabbit infectivity testing.
Yang L, Zhang X, Chen W, Seña AC, Zheng H, Jiang Y, Zhao P, Chen R, Wang L, Ke W, Salazar JC, Parr JB, Tucker JD, Hawley KL, Caimano MJ, Hennelly CM, Aghakanian F, Zhang F, Chen JS, Moody MA, Radolf JD, Yang B
medRxiv : the preprint server for health sciences (2023) : PMC10614984 10.1101/2023.10.17.23297169 - Archaeal Tubulin-like Proteins Modify Cell Shape in during Early Biofilm Development.
Cooper A, Makkay AM, Papke RT
Genes (2023) 14(10): PMC8406309 10.1016/j.cub.2012.05.056 - Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation.
Wang J, Li L, Lin S
Applied and environmental microbiology (2023) 89(11):e0115623 PMC7931819 10.18637/jss.v025.i03 - Deconstructing interactions in the microbiota: A theoretical examination.
Yitbarek S, Guittar J, Knutie SA, Ogbunugafor CB
iScience (2023) 26(10):107875 PMC10067270 10.1016/j.physrep.2020.05.004 - Contemporary changes in phenotypic variation, and the potential consequences for eco-evolutionary dynamics.
Sanderson S, Bolnick DI, Kinnison MT, O'Dea RE, Gorné LD, Hendry AP, Gotanda KM
Ecology letters (2023) 26 Suppl 1:S127-S139 10.1111/ele.14186 - Species-dependent effects of seawater acidification on alkaline phosphatase activity in dinoflagellates.
Guo C, Li L, Lin S, Lin X
Journal of phycology (2023) 59(6):1347-1352 10.1111/jpy.13398 - Effect of urbanization and parasitism on the gut microbiota of Darwin's finch nestlings.
Solomon G, Love AC, Vaziri GJ, Harvey J, Verrett T, Chernicky K, Simons S, Albert L, Chaves JA, Knutie SA
Molecular ecology (2023) 32(22):6059-6069 10.1111/mec.17164 - Enhanced circularly polarized luminescence dissymmetry of [Ru(bpy)] complexes in a 3D chiral framework: a study of transparent thin films.
Zhang S, Schnable D, Elgin J, Ung G, Wu Y
Chemical communications (Cambridge, England) (2023) 59(86):12867-12870 10.1039/d3cc04083f - Research Note: In ovo and in-feed probiotic supplementation improves layer embryo and pullet growth.
Muyyarikkandy MS, Mathew E, Kuttappan D, Amalaradjou MA
Poultry science (2023) 102(12):103092 PMC6543855 10.1016/j.psj.2023.103092 - Phosphorus nutrition strategies in a Symbiodiniacean species: Implications in coral-alga symbiosis facing increasing phosphorus deficiency in future warmer oceans.
Li J, Zhang K, Li L, Wang Y, Lin S
Global change biology (2023) 29(23):6558-6571 10.1111/gcb.16945 - Deciphering the ecoevolutionary recipe of milk microbiomes.
Hird SM
Trends in ecology & evolution (2023) 38(11):1019-1021 10.1016/j.tree.2023.09.004 - Two-sided effects of the organic phosphorus phytate on a globally important marine coccolithophorid phytoplankton.
Li J, Zhang K, Li L, Wang Y, Wang C, Lin S
Microbiology spectrum (2023) 11(5):e0125523 PMC3218662 10.1186/gb-2010-11-10-r106 - Artificial intelligence for natural product drug discovery.
Mullowney MW, Duncan KR, Elsayed SS, Garg N, van der Hooft JJJ, Martin NI, Meijer D, Terlouw BR, Biermann F, Blin K, Durairaj J, Gorostiola González M, Helfrich EJN, Huber F, Leopold-Messer S, Rajan K, de Rond T, van Santen JA, Sorokina M, Balunas MJ, Beniddir MA, van Bergeijk DA, Carroll LM, Clark CM, Clevert DA, Dejong CA, Du C, Ferrinho S, Grisoni F, Hofstetter A, Jespers W, Kalinina OV, Kautsar SA, Kim H, Leao TF, Masschelein J, Rees ER, Reher R, Reker D, Schwaller P, Segler M, Skinnider MA, Walker AS, Willighagen EL, Zdrazil B, Ziemert N, Goss RJM, Guyomard P, Volkamer A, Gerwick WH, Kim HU, Müller R, van Wezel GP, van Westen GJP, Hirsch AKH, Linington RG, Robinson SL, Medema MH
Nature reviews. Drug discovery (2023) 22(11):895-916 10.1186/s13321-022-00672-x - Use of Epivolve phage display to generate a monoclonal antibody with opsonic activity directed against a subdominant epitope on extracellular loop 4 of BamA (TP0326).
Ferguson MR, Delgado KN, McBride S, Orbe IC, La Vake CJ, Caimano MJ, Mendez Q, Moraes TF, Schryvers AB, Moody MA, Radolf JD, Weiner MP, Hawley KL
Frontiers in immunology (2023) 14:1222267 PMC7709521 10.1128/MMBR.00078-20 - Nylon microfibers develop a distinct plastisphere but have no apparent effects on the gut microbiome or gut tissue status in the blue mussel, Mytilus edulis.
Collins HI, Griffin TW, Holohan BA, Ward JE
Environmental microbiology (2023) 25(12):2792-2806 10.1111/1462-2920.16496 - Role of diatom-derived oxylipins in organic phosphorus recycling during coastal diatom blooms in the northern South China Sea.
Wu Z, Li QP, Rivkin RB, Lin S
The Science of the total environment (2023) 903:166518 10.1016/j.scitotenv.2023.166518 - 3D-printed epidermal sweat microfluidic systems with integrated microcuvettes for precise spectroscopic and fluorometric biochemical assays.
Yang DS, Wu Y, Kanatzidis EE, Avila R, Zhou M, Bai Y, Chen S, Sekine Y, Kim J, Deng Y, Guo H, Zhang Y, Ghaffari R, Huang Y, Rogers JA
Materials horizons (2023) 10(11):4992-5003 10.1039/d3mh00876b - Thermomechanical Properties of Neutron Irradiated AlHf-Al Thermal Neutron Absorber Materials.
Guillen DP, Toloczko MB, Prabhakaran R, Zhu Y, Lu Y, Wu Y
Materials (Basel, Switzerland) (2023) 16(16): PMC10456384 10.1016/0022-3115(93)90129-M - Resistance waxes for mutualists protected by wasp secretions.
Klassen JL
Proceedings of the National Academy of Sciences of the United States of America (2023) 120(36):e2311815120 PMC8983117 10.1073/pnas.2311815120 - Editorial: Advancing social equity through microbiology.
Oliveira LMA, Kozik A, Milligan-McClellan K, Hagan AK
Frontiers in cellular and infection microbiology (2023) 13:1260284 PMC7117800 10.1007/s10620-020-06112-w - A comparative study reveals the relative importance of prokaryotic and eukaryotic proton pump rhodopsins in a subtropical marginal sea.
Ma M, Li H, Wang C, Li T, Wang J, Yuan H, Yu L, Wang J, Li L, Lin S
ISME communications (2023) 3(1):79 PMC3090418 10.1038/s43705-023-00292-y - The impact of environmental conditions and milk type on microbial communities of wooden vats and cheeses produced therein.
Sun L, D'Amico DJ
Food microbiology (2023) 115:104319 10.1016/j.fm.2023.104319 - Editorial: Microbial associates of blood-sucking arthropods and other animals: relevance to their physiology, ecology and evolution.
Fukatsu T, Gottlieb Y, Duron O, Graf J
Frontiers in microbiology (2023) 14:1256275 PMC5007164 10.1016/j.pt.2017.04.008 - Recombination as an enforcement mechanism of prosocial behavior in cooperating bacteria.
Lee IPA, Eldakar OT, Gogarten JP, Andam CP
iScience (2023) 26(8):107344 PMC3240628 10.1038/s41579-021-00650-4 - Clinical and genomic diversity of A global, multi-center study of early syphilis to inform vaccine research.
Seña AC, Matoga MM, Yang L, Lopez-Medina E, Aghakanian F, Chen JS, Bettin EB, Caimano MJ, Chen W, Garcia-Luna JA, Hennelly CM, Jiang Y, Juliano JJ, Pospíšilová P, Ramirez L, Šmajs D, Tucker JD, Cely FV, Zheng H, Hoffman IF, Yang B, Moody MA, Hawley KL, Salazar JC, Radolf JD, Parr JB
medRxiv : the preprint server for health sciences (2023) : PMC10402240 10.1101/2023.07.19.23291250 - Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum.
Glass SE, McCourt RM, Gottschalk SD, Lewis LA, Karol KG
Journal of phycology (2023) 59(6):1133-1146 10.1111/jpy.13359 - Reproductive phenologies of phyllostomid bat populations and ensembles from lowland Amazonia.
Willig MR, Presley SJ
Journal of mammalogy (2023) 104(4):752-769 PMC6394116 10.1093/jmammal/gyad032 - Effect of plant-derived antimicrobials, eugenol, carvacrol, and β-resorcylic acid against Salmonella on organic chicken wings and carcasses.
Nair DVT, Manjankattil S, Peichel C, Martin W, Donoghue AM, Venkitanarayanan K, Kollanoor Johny A
Poultry science (2023) 102(10):102886 PMC8394320 10.1016/j.psj.2023.102886 - In vivo structure probing of RNA in : novel insights into the ribosome structure of .
Williams AM, Jolley EA, Santiago-Martínez MG, Chan CX, Gutell RR, Ferry JG, Bevilacqua PC
RNA (New York, N.Y.) (2023) 29(10):1610-1620 PMC9231505 10.1016/j.tibs.2019.01.012 - Mixoplankton and mixotrophy: future research priorities.
Millette NC, Gast RJ, Luo JY, Moeller HV, Stamieszkin K, Andersen KH, Brownlee EF, Cohen NR, Duhamel S, Dutkiewicz S, Glibert PM, Johnson MD, Leles SG, Maloney AE, Mcmanus GB, Poulton N, Princiotta SD, Sanders RW, Wilken S
Journal of plankton research (2023) 45(4):576-596 PMC2722351 10.1038/nature07236 - Conformational exchange at a CH zinc-binding site facilitates redox sensing by the PML protein.
Bregnard TA, Fairchild D, Erlandsen H, Semenova IV, Szczepaniak R, Ahmed A, Weller SK, Korzhnev DM, Bezsonova I
Structure (London, England : 1993) (2023) 31(9):1086-1099.e6 PMC3855844 10.1038/nmeth.2019 - The fitness of an introgressing haplotype changes over the course of divergence and depends on its size and genomic location.
Dagilis AJ, Matute DR
PLoS biology (2023) 21(7):e3002185 PMC3469467 10.1016/j.mbs.2016.04.010 - CNAsim: improved simulation of single-cell copy number profiles and DNA-seq data from tumors.
Weiner S, Bansal MS
Bioinformatics (Oxford, England) (2023) 39(7): PMC3966983 10.1093/bioinformatics/btad434 - Locomotor effects of a fibrosis-based immune response in stickleback fish.
Matthews DG, Maciejewski MF, Wong GA, Lauder GV, Bolnick DI
bioRxiv : the preprint server for biology (2023) : PMC1200442 10.1101/2023.06.24.546342 - Emergence of novel genomic regulatory regions associated with light-organ development in the bobtail squid.
Rouressol L, Briseno J, Vijayan N, Chen GY, Ritschard EA, Sanchez G, Nyholm SV, McFall-Ngai MJ, Simakov O
iScience (2023) 26(7):107091 PMC6324079 10.1002/wdev.265 - Opening a can of worms: a test of the co-infection facilitation hypothesis.
Rodgers ML, Bolnick DI
Oecologia (2023) 204(2):317-325 PMC9869647 10.1126/science.abo3411 - Cephalopod-omics: Emerging Fields and Technologies in Cephalopod Biology.
Baden T, Briseño J, Coffing G, Cohen-Bodénès S, Courtney A, Dickerson D, Dölen G, Fiorito G, Gestal C, Gustafson T, Heath-Heckman E, Hua Q, Imperadore P, Kimbara R, Król M, Lajbner Z, Lichilín N, Macchi F, McCoy MJ, Nishiguchi MK, Nyholm SV, Otjacques E, Pérez-Ferrer PA, Ponte G, Pungor JR, Rogers TF, Rosenthal JJC, Rouressol L, Rubas N, Sanchez G, Santos CP, Schultz DT, Seuntjens E, Songco-Casey JO, Stewart IE, Styfhals R, Tuanapaya S, Vijayan N, Weissenbacher A, Zifcakova L, Schulz G, Weertman W, Simakov O, Albertin CB
Integrative and comparative biology (2023) 63(6):1226-1239 PMC9699675 10.1101/pdb.ip77 - Elemental content of a host-parasite relationship in the threespine stickleback.
Grunberg RL, Braat M, Bolnick DI
Oecologia (2023) 204(2):427-437 10.1073/pnas.1620095114 - Lactate oxidation is linked to energy conservation and to oxygen detoxification via a putative terminal cytochrome oxidase in Methanosarcina acetivorans.
Feregrino-Mondragón RD, Santiago-Martínez MG, Silva-Flores M, Encalada R, Reyes-Prieto A, Rodríguez-Zavala JS, Peña-Ocaña BA, Moreno-Sánchez R, Saavedra E, Jasso-Chávez R
Archives of biochemistry and biophysics (2023) 743:109667 10.1016/j.abb.2023.109667 - The relationship between microplastics in eastern oysters (Crassostrea virginica) and surrounding environmental compartments in Long Island Sound.
Mladinich K, Holohan BA, Shumway SE, Ward JE
Marine environmental research (2023) 189:106040 10.1016/j.marenvres.2023.106040 - ants promote fungus garden hygiene using -derived metabolite cues.
Kyle KE, Puckett SP, Caraballo-Rodríguez AM, Rivera-Chávez J, Samples RM, Earp CE, Raja HA, Pearce CJ, Ernst M, van der Hooft JJJ, Adams ME, Oberlies NH, Dorrestein PC, Klassen JL, Balunas MJ
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The Journal of infectious diseases (2021) 224(Supplement):S1-S21 PMC8280938 10.1093/infdis/jiab305 - The AcrAB-TolC Efflux Pump Impacts Persistence and Resistance Development in Stationary-Phase Escherichia coli following Delafloxacin Treatment.
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Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2021) 26:119-130 - Microbial signatures of health, gingivitis, and periodontitis.
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Proceedings of the National Academy of Sciences of the United States of America (2021) 118(2): PMC7812834 10.1073/pnas.2002556117 - The Antimicrobial Peptide Gad-1 Clears Pseudomonas aeruginosa Biofilms under Cystic Fibrosis Conditions.
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PeerJ (2020) 8:e10424 PMC7718787 10.7717/peerj.10424 - Insights into gene expression changes under conditions that facilitate horizontal gene transfer (mating) of a model archaeon.
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The Journal of clinical investigation (2020) 131(3): PMC7843235 10.1172/JCI142823 - Receptor-targeted engineered probiotics mitigate lethal Listeria infection.
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Nature communications (2020) 11(1):6344 PMC7732855 10.1038/s41467-020-20200-5 - Functional Gene Expression in Shark Bay Hypersaline Microbial Mats: Adaptive Responses.
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Frontiers in microbiology (2020) 11:560336 PMC7702295 10.3389/fmicb.2020.560336 - Adding the third dimension to studies of parallel evolution of morphology and function: An exploration based on parapatric lake-stream stickleback.
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Ecology and evolution (2020) 10(23):13297-13311 PMC7713967 10.1002/ece3.6929 - Lyme Disease in Humans.
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Anaerobe (2020) 67:102302 10.1016/j.anaerobe.2020.102302 - Transdermal microneedles for the programmable burst release of multiple vaccine payloads.
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Molecular ecology (2020) 30(2):451-463 10.1111/mec.15746 - Draft Genome Sequence of Spiroplasma platyhelix ATCC 51748, Isolated from a Dragonfly.
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Microbiology resource announcements (2020) 9(47): PMC7679083 10.1128/MRA.00422-20 - Trends and Transitions in 150 Years of .
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The American naturalist (2020) 196(6):663-678 10.1086/711418 - Analysis of disulphide bond linkage between CoA and protein cysteine thiols during sporulation and in spores of Bacillus species.
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FEMS microbiology letters (2020) 367(23): PMC8127865 10.1093/femsle/fnaa174 - Transcriptome profiling reveals versatile dissolved organic nitrogen utilization, mixotrophy, and N conservation in the dinoflagellate Prorocentrum shikokuense under N deficiency.
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The Science of the total environment (2020) 763:143013 10.1016/j.scitotenv.2020.143013 - Abundant synthesis of long-chain polyunsaturated fatty acids in Eutreptiella sp. (Euglenozoa) revealed by chromatographic and transcriptomic analyses.
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Nature microbiology (2020) 6(1):136 PMC7752755 10.1038/s41564-020-00827-2 - Proteome and Microbiome Mapping of Human Gingival Tissue in Health and Disease.
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Frontiers in cellular and infection microbiology (2020) 10:588155 PMC7566166 10.3389/fcimb.2020.588155 - The influence of host tissue on M. gallisepticum vlhA gene expression.
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Veterinary microbiology (2020) 251:108891 10.1016/j.vetmic.2020.108891 - Cycloheximide-Producing Associated With and Fungus-Farming Ambrosia Beetles.
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Frontiers in microbiology (2020) 11:562140 PMC7546818 10.3389/fmicb.2020.562140 - Novel guanidine compounds inhibit platelet-derived growth factor receptor alpha transcription and oligodendrocyte precursor cell proliferation.
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Glia (2020) 69(3):792-811 PMC7856068 10.1002/glia.23930 - Outcomes From Re-Treatment and Cerebrospinal Fluid Analyses in Patients With Syphilis Who Had Serological Nonresponse or Lack of Seroreversion After Initial Therapy.
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Sexually transmitted diseases (2020) 48(6):443-450 PMC8058108 10.1097/OLQ.0000000000001321 - Depression prevalence based on the Edinburgh Postnatal Depression Scale compared to Structured Clinical Interview for DSM DIsorders classification: Systematic review and individual participant data meta-analysis.
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International journal of methods in psychiatric research (2020) 30(1):e1860 PMC7992289 10.1002/mpr.1860 - Differential enrichment and physiological impacts of ingested microplastics in scleractinian corals in situ.
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Applied and environmental microbiology (2020) 87(1): PMC7755257 10.1128/AEM.01401-20 - Closed Genome Sequence of Aeromonas veronii Strain Hm21, an Isolate from the Medicinal Leech Hirudo verbana.
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Frontiers in microbiology (2020) 11:553670 PMC7524895 10.3389/fmicb.2020.553670 - Use of bacteria community analysis to distinguish groundwater recharge sources to shallow wells.
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Journal of environmental quality (2020) 49(6):1530-1540 10.1002/jeq2.20150 - Hybrid Coronary Revascularization Versus Conventional Coronary Artery Bypass Surgery: Utilization and Comparative Outcomes.
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Inorganic chemistry (2020) 59(20):14866-14870 10.1021/acs.inorgchem.0c02491 - The Cu(II) Reductase RclA Protects against the Combination of Hypochlorous Acid and Intracellular Copper.
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Integrative and comparative biology (2020) 63(1):250-62 PMC3162596 10.1093/icb/icaa136 - The interactive effects of titanium dioxide nanoparticles and light on heterotrophic bacteria and microalgae associated with marine aggregates in nearshore waters.
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Marine environmental research (2020) 161:105146 10.1016/j.marenvres.2020.105146 - Microbial dark matter filling the niche in hypersaline microbial mats.
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Genome biology and evolution (2020) 12(9):1616-1622 PMC7523726 10.1093/gbe/evaa185 - HPV-EM: an accurate HPV detection and genotyping EM algorithm.
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ACS central science (2019) 5(11):1824-1833 PMC6891855 10.1021/acscentsci.9b00806 - Microplastic exposure represses the growth of endosymbiotic dinoflagellate Cladocopium goreaui in culture through affecting its apoptosis and metabolism.
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Chemosphere (2019) 244:125485 10.1016/j.chemosphere.2019.125485 - Review of Antibiotic Resistance, Ecology, Dissemination, and Mitigation in U.S. Broiler Poultry Systems.
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Frontiers in microbiology (2019) 10:2639 PMC6872647 10.3389/fmicb.2019.02639 - Temporally varying disruptive selection in the medium ground finch ().
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Proceedings. Biological sciences (2019) 286(1916):20192290 PMC6939253 10.1098/rspb.2019.2290 - Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens.
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Fungal ecology (2019) 41:147-164 PMC6876628 10.1016/j.funeco.2019.06.002 - The Herpes Simplex Virus 1 Immediate Early Protein ICP22 Is a Functional Mimic of a Cellular J Protein.
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Journal of virology (2019) 94(4): PMC6997750 10.1128/JVI.01564-19 - Functional and structural basis of E. coli enolase inhibition by SF2312: a mimic of the carbanion intermediate.
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Scientific reports (2019) 9(1):17106 PMC6863902 10.1038/s41598-019-53301-3 - No evidence for phylosymbiosis in western chipmunk species.
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FEMS microbiology ecology (2019) 96(1): 10.1093/femsec/fiz182 - Inactivation of Escherichia coli O157:H7 in apple cider by resveratrol and naringenin.
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Food microbiology (2019) 86:103327 10.1016/j.fm.2019.103327 - Shielding the Next Generation: Symbiotic Bacteria from a Reproductive Organ Protect Bobtail Squid Eggs from Fungal Fouling.
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mBio (2019) 10(5): PMC6819662 10.1128/mBio.02376-19 - Editorial: Characterizing Modern Microbialites and the Geobiological Processes Underlying Their Formation.
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Frontiers in microbiology (2019) 10:2299 PMC6794560 10.3389/fmicb.2019.02299 - Illuminating the dark depths inside coral.
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Cellular microbiology (2019) 22(1):e13122 10.1111/cmi.13122 - Microbial Interactions in Oral Communities Mediate Emergent Biofilm Properties.
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Journal of dental research (2019) 99(1):18-25 PMC6927214 10.1177/0022034519880157 - Transcriptional and Pathological Host Responses to Coinfection with Virulent or Attenuated Mycoplasma gallisepticum and Low-Pathogenic Avian Influenza A Virus in Chickens.
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Infection and immunity (2019) 88(1): PMC6921668 10.1128/IAI.00607-19 - NMR Mapping of Disordered Segments from a Viral Scaffolding Protein Enclosed in a 23 MDa Procapsid.
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Biophysical journal (2019) 117(8):1387-1392 PMC6817520 10.1016/j.bpj.2019.08.038 - Biased movement drives local cryptic coloration on distinct urban pavements.
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Proceedings. Biological sciences (2019) 286(1912):20191343 PMC6790761 10.1098/rspb.2019.1343 - Characterization and Expression Analysis of Genes in Suggest Different Divergences of Tandem Duplicates.
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Frontiers in genetics (2019) 10:805 PMC6752658 10.3389/fgene.2019.00805 - Diverse deep-sea anglerfishes share a genetically reduced luminous symbiont that is acquired from the environment.
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eLife (2019) 8: PMC6773444 10.7554/eLife.47606 - Toward Broad Spectrum Dihydrofolate Reductase Inhibitors Targeting Trimethoprim Resistant Enzymes Identified in Clinical Isolates of Methicillin Resistant .
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ACS infectious diseases (2019) 5(11):1896-1906 PMC7025792 10.1021/acsinfecdis.9b00222 - Comparison of major depression diagnostic classification probability using the SCID, CIDI, and MINI diagnostic interviews among women in pregnancy or postpartum: An individual participant data meta-analysis.
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International journal of methods in psychiatric research (2019) 28(4):e1803 PMC7027670 10.1002/mpr.1803 - mSphere of Influence: an Inupiat Journey in Science.
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The Science of the total environment (2019) 699:134323 10.1016/j.scitotenv.2019.134323 - The RpoS Gatekeeper in : An Invariant Regulatory Scheme That Promotes Spirochete Persistence in Reservoir Hosts and Niche Diversity.
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Frontiers in microbiology (2019) 10:1923 PMC6719511 10.3389/fmicb.2019.01923 - Accurate and efficient cell lineage tree inference from noisy single cell data: the maximum likelihood perfect phylogeny approach.
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Bioinformatics (Oxford, England) (2019) 36(3):742-750 10.1093/bioinformatics/btz676 - Understanding Maladaptation by Uniting Ecological and Evolutionary Perspectives.
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The American naturalist (2019) 194(4):495-515 10.1086/705020 - -Cinnamaldehyde, Eugenol and Carvacrol Reduce Biofilms and Modulate Expression of Select Genes and Proteins.
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Frontiers in microbiology (2019) 10:1837 PMC6698798 10.3389/fmicb.2019.01837 - Antimicrobial and Antibiofilm Activities of Helical Antimicrobial Peptide Sequences Incorporating Metal-Binding Motifs.
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Biochemistry (2019) 58(36):3802-3812 10.1021/acs.biochem.9b00440 - Efomycins K and L From a Termite-Associated sp. M56 and Their Putative Biosynthetic Origin.
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Frontiers in microbiology (2019) 10:1739 PMC6691879 10.3389/fmicb.2019.01739 - Trends in Solid Adsorbent Materials Development for CO Capture.
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ACS applied materials & interfaces (2019) 11(38):34533-34559 10.1021/acsami.9b08487 - Causes of maladaptation.
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Evolutionary applications (2019) 12(7):1229-1242 PMC6691215 10.1111/eva.12844 - Energy-Geometry Dependency of Molecular Structures: A Multistep Machine Learning Approach.
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ACS combinatorial science (2019) 21(9):614-621 10.1021/acscombsci.9b00028 - Mechanisms of enhanced bacterial endospore inactivation during sterilization by ohmic heating.
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Bioelectrochemistry (Amsterdam, Netherlands) (2019) 130:107338 10.1016/j.bioelechem.2019.107338 - Non-Conventional Metal Ion Cofactor Requirement of Dinoflagellate Alkaline Phosphatase and Translational Regulation by Phosphorus Limitation.
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Microorganisms (2019) 7(8): PMC6723241 10.3390/microorganisms7080232 - Portal Protein: The Orchestrator of Capsid Assembly for the dsDNA Tailed Bacteriophages and Herpesviruses.
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Annual review of virology (2019) 6(1):141-160 PMC6947915 10.1146/annurev-virology-092818-015819 - Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.
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PloS one (2019) 14(7):e0220347 PMC6650065 10.1371/journal.pone.0220347 - Ambient pH Alters the Protein Content of Outer Membrane Vesicles, Driving Host Development in a Beneficial Symbiosis.
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Journal of bacteriology (2019) 201(20): PMC6755730 10.1128/JB.00319-19 - Selective Ingestion and Egestion of Plastic Particles by the Blue Mussel () and Eastern Oyster (): Implications for Using Bivalves as Bioindicators of Microplastic Pollution.
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Environmental science & technology (2019) 53(15):8776-8784 10.1021/acs.est.9b02073 - Accumulation and Release of Rare Earth Ions by Spores of Species and the Location of These Ions in Spores.
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Applied and environmental microbiology (2019) 85(17): PMC6696969 10.1128/AEM.00956-19 - Mass spectrometry driven exploration reveals nuances of neoepitope-driven tumor rejection.
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JCI insight (2019) 5: PMC6675551 10.1172/jci.insight.129152 - Microbiomes, Community Ecology, and the Comparative Method.
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PloS one (2019) 14(6):e0217804 PMC6578490 10.1371/journal.pone.0217804 - Structure guided in-vitro to in-vivo pharmacokinetic optimization of propargyl-linked antifolates.
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Drug Metab. Dispos. (2019) : 10.1124/dmd.119.086504 - Integrated Analysis of Clinical and Microbiome Risk Factors Associated with the Development of Oral Candidiasis during Cancer Chemotherapy.
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Journal of fungi (Basel, Switzerland) (2019) 5(2): PMC6617088 10.3390/jof5020049 - Persistent symbiont colonization leads to a maturation of hemocyte response in the Euprymna scolopes/Vibrio fischeri symbiosis.
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MicrobiologyOpen (2019) 8(10):e858 PMC6813443 10.1002/mbo3.858 - Methylome Dynamics of Bovine Gametes and Early Embryos.
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Frontiers in genetics (2019) 10:512 PMC6546829 10.3389/fgene.2019.00512 - Phylogenetic supertree and functional trait database for all extant parrots.
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eLife (2019) 8: PMC6561751 10.7554/eLife.48268 - Of capsid structure and stability: The partnership between charged residues of E-loop and P-domain of the bacteriophage P22 coat protein.
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Virology (2019) 534:45-53 PMC6614003 10.1016/j.virol.2019.05.021 - In vitro efficacy of sodium selenite in reducing toxin production, spore outgrowth and antibiotic resistance in hypervirulent Clostridium difficile.
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Journal of medical microbiology (2019) 68(7):1118-1128 10.1099/jmm.0.001008 - Classification of Tea Aromas Using Multi-Nanoparticle Based Chemiresistor Arrays.
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Sensors (Basel, Switzerland) (2019) 19(11): PMC6603602 10.3390/s19112547 - GAPPadder: a sensitive approach for closing gaps on draft genomes with short sequence reads.
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BMC genomics (2019) 20(Suppl 5):426 PMC6551238 10.1186/s12864-019-5703-4 - Identification and characterization of putative Aeromonas spp. T3SS effectors.
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PloS one (2019) 14(6):e0214035 PMC6548356 10.1371/journal.pone.0214035 - Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback.
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Philosophical transactions of the Royal Society of London. Series B, Biological sciences (2019) 374(1777):20180241 PMC6560272 10.1098/rstb.2018.0241 - Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae.
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PeerJ (2019) 7:e6899 PMC6525593 10.7717/peerj.6899 - Populations are not declining and food webs are not collapsing at the Luquillo Experimental Forest.
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Proceedings of the National Academy of Sciences of the United States of America (2019) 116(25):12143-12144 PMC6589750 10.1073/pnas.1820456116 - Checkerboard metacommunity structure: an incoherent concept.
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Oecologia (2019) 190(2):323-331 10.1007/s00442-019-04420-1 - Flagellar regulation mediated by the Rcs pathway is required for virulence in the fish pathogen Yersinia ruckeri.
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Fish & shellfish immunology (2019) 91:306-314 10.1016/j.fsi.2019.05.036 - Structural and functional analyses of the N-terminal domain of the A subunit of a spore germinant receptor.
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Proceedings of the National Academy of Sciences of the United States of America (2019) 116(23):11470-11479 PMC6561283 10.1073/pnas.1903675116 - The VP1 G-H loop hypervariable epitope contributes to protective immunity against Foot and Mouth Disease Virus in swine.
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Vaccine (2019) 37(26):3435-3442 10.1016/j.vaccine.2019.05.019 - A Hydrophobic Network: Intersubunit and Intercapsomer Interactions Stabilizing the Bacteriophage P22 Capsid.
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Journal of virology (2019) 93(14): PMC6600197 10.1128/JVI.00727-19 - Properties of Aged Spores of .
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J. Bacteriol. (2019) : 10.1128/JB.00231-19 - Incubation and grazing effects on spirotrich ciliate diversity inferred from molecular analyses of microcosm experiments.
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PloS one (2019) 14(5):e0215872 PMC6502329 10.1371/journal.pone.0215872 - Fecal Microbiomes in Premature Infants With and Without Parenteral Nutrition-Associated Cholestasis.
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Journal of pediatric gastroenterology and nutrition (2019) 69(2):224-230 10.1097/MPG.0000000000002352 - The evolution of hybrid fitness during speciation.
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PLoS genetics (2019) 15(5):e1008125 PMC6502311 10.1371/journal.pgen.1008125 - Thioredoxin-1 confines T cell alloresponse and pathogenicity in graft-versus-host disease.
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The Journal of clinical investigation (2019) 129(7):2760-2774 PMC6597211 10.1172/JCI122899 - Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation.
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mBio (2019) 10(2): PMC6495382 10.1128/mBio.02825-18 - Visualization of Germinosomes and the Inner Membrane in Bacillus subtilis Spores.
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Journal of visualized experiments : JoVE (2019) (146): 10.3791/59388 - Mechanism of inactivation of Bacillus subtilis spores by high pressure CO at high temperature.
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Food microbiology (2019) 82:36-45 10.1016/j.fm.2019.01.014 - Chemotherapy-induced oral mucositis is associated with detrimental bacterial dysbiosis.
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Microbiome (2019) 7(1):66 PMC6482518 10.1186/s40168-019-0679-5 - Human activity can influence the gut microbiota of Darwin's finches in the Galapagos Islands.
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Molecular ecology (2019) 28(9):2441-2450 10.1111/mec.15088 - Candida albicans induces mucosal bacterial dysbiosis that promotes invasive infection.
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PLoS pathogens (2019) 15(4):e1007717 PMC6497318 10.1371/journal.ppat.1007717 - Altered Immune Landscape and Disrupted Coral- Symbiosis in the Scleractinian Coral by Challenge.
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Front Physiol (2019) 10:366 (PMC6454040) 10.3389/fphys.2019.00366 - House Dust Mite-Induced Allergic Lung Inflammation Is Not Exacerbated in Sickle Cell Disease Mice.
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International archives of allergy and immunology (2019) 179(3):192-200 10.1159/000499043 - Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in .
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Microorganisms (2019) 7(4): (PMC6517890) 10.3390/microorganisms7040096 - Edible Coatings Fortified With Carvacrol Reduce on Chicken Wingettes and Modulate Expression of Select Virulence Genes.
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Frontiers in microbiology (2019) 10:583 PMC6448016 10.3389/fmicb.2019.00583 - Sediment organic carbon and temperature effects on methylmercury concentration: A mesocosm experiment.
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The Science of the total environment (2019) 666:1316-1326 PMC6461384 10.1016/j.scitotenv.2019.02.302 - Metatranscriptomic Signatures Associated With Phytoplankton Regime Shift From Diatom Dominance to a Dinoflagellate Bloom.
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Front Microbiol (2019) 10:590 (PMC6439486) 10.3389/fmicb.2019.00590 - Annual environmental variation influences host tolerance to parasites.
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Proceedings. Biological sciences (2019) 286(1897):20190049 PMC6408884 10.1098/rspb.2019.0049 - The phage L capsid decoration protein has a novel OB-fold and an unusual capsid binding strategy.
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eLife (2019) 8: PMC6449081 10.7554/eLife.45345 - CD91 on dendritic cells governs immunosurveillance of nascent, emerging tumors.
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JCI insight (2019) 4(7): PMC6483634 10.1172/jci.insight.127239 - Complete Genome Sequence of Halorubrum ezzemoulense Strain Fb21.
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Microbiology resource announcements (2019) 8(12): PMC6430316 10.1128/MRA.00096-19 - Analysis of the antiparasitic and anticancer activity of the coconut palm (Cocos nucifera L. ARECACEAE) from the natural reserve of Punta Patiño, Darién.
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PloS one (2019) 14(4):e0214193 PMC6445518 10.1371/journal.pone.0214193 - Drugging the Folate Pathway in Mycobacterium tuberculosis: The Role of Multi-targeting Agents.
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Cell chemical biology (2019) 26(6):781-791.e6 PMC6588435 10.1016/j.chembiol.2019.02.013 - Molecular Dynamics Investigation into the Effect of Zinc(II) on the Structure and Membrane Interactions of the Antimicrobial Peptide Clavanin A.
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Newcomer RL, Fraser LCR, Teschke CM, Alexandrescu AT
Biophys. J. (2015) 109(12):2666-2677 (PMC4699920) - Draft Genome Sequence of Pedobacter sp. Strain Hv1, an Isolate from Medicinal Leech Mucosal Castings.
Ott BM, Beka L, Graf J, Rio RV
Genome Announc (2015) 3(6): (PMC4683228) - Draft Genome Sequences of Six Pseudoalteromonas Strains, P1-7a, P1-9, P1-13-1a, P1-16-1b, P1-25, and P1-26, Which Induce Larval Settlement and Metamorphosis in Hydractinia echinata.
Klassen JL, Wolf T, Rischer M, Guo H, Shelest E, Clardy J, Beemelmanns C
Genome Announc (2015) 3(6): (PMC4683232) - Innate immune responses to gut microbiota differ between oceanic and freshwater threespine stickleback populations.
Milligan-Myhre K, Small CM, Mittge EK, Agarwal M, Currey M, Cresko WA, Guillemin K
Disease models & mechanisms (2015) 9(2):187-98 PMC3017379 10.3354/ame028141 - ICP8 Filament Formation Is Essential for Replication Compartment Formation during Herpes Simplex Virus Infection.
Darwish AS, Grady LM, Bai P, Weller SK
J. Virol. (2015) 90(5):2561-70 (PMC4810729) 10.1128/JVI.02854-15 - Genome Sequences of Three Pseudoalteromonas Strains (P1-8, P1-11, and P1-30), Isolated from the Marine Hydroid Hydractinia echinata.
Klassen JL, Rischer M, Wolf T, Guo H, Shelest E, Clardy J, Beemelmanns C
Genome Announc (2015) 3(6): (PMC4675935) - An examination of the factors influencing mercury and methylmercury particulate distributions, methylation and demethylation rates in laboratory-generated marine snow.
Ortiz VL, Mason RP, Ward JE
Mar Chem (2015) 177(Pt 5):753-762 (PMC4669965) 10.1016/j.marchem.2015.07.006 - Uptake of and Resistance to the Antibiotic Berberine by Individual Dormant, Germinating and Outgrowing Bacillus Spores as Monitored by Laser Tweezers Raman Spectroscopy.
Wang S, Yu J, Suvira M, Setlow P, Li YQ
PLoS ONE (2015) 10(12):e0144183 (PMC4670213) - Untwisting the Caenorhabditis elegans embryo.
Christensen RP, Bokinsky A, Santella A, Wu Y, Marquina-Solis J, Guo M, Kovacevic I, Kumar A, Winter PW, Tashakkori N, McCreedy E, Liu H, McAuliffe M, Mohler W, Colón-Ramos DA, Bao Z, Shroff H
Elife (2015) 4: (PMC4764590) 10.7554/eLife.10070 - Space station image captures a red tide ciliate bloom at high spectral and spatial resolution.
Dierssen H, McManus GB, Chlus A, Qiu D, Gao BC, Lin S
Proc. Natl. Acad. Sci. U.S.A. (2015) 112(48):14783-7 (PMC4672822) - Spliced leader RNA trans-splicing discovered in copepods.
Yang F, Xu D, Zhuang Y, Yi X, Huang Y, Chen H, Lin S, Campbell DA, Sturm NR, Liu G, Zhang H
Sci Rep (2015) 5:17411 (PMC4664967) 10.1038/srep17411 - Integration of linear and dendritic actin nucleation in Nck-induced actin comets.
Borinskaya S, Velle KB, Campellone KG, Talman A, Alvarez D, Agaisse H, Wu YI, Loew LM, Mayer BJ
Mol. Biol. Cell (2015) 27(2):247-59 (PMC4713129) 10.1091/mbc.E14-11-1555 - Memory of Germinant Stimuli in Bacterial Spores.
Wang S, Faeder JR, Setlow P, Li YQ
MBio (2015) 6(6):e01859-15 (PMC4669388) - The challenge of resistance in antimicrobial drug development.
Anderson AC, Wright DL
Future Microbiol (2015) 10(11):1709-10 (PMC4733617) 10.2217/fmb.15.75 - Exposure to pairs of Aeromonas strains enhances virulence in the Caenorhabditis elegans infection model.
Mosser T, Talagrand-Reboul E, Colston SM, Graf J, Figueras MJ, Jumas-Bilak E, Lamy B
Front Microbiol (2015) 6:1218 (PMC4631986) - Impact of different ratios of feedstock to liquid anaerobic digestion effluent on the performance and microbiome of solid-state anaerobic digesters digesting corn stover.
Li YF, Shi J, Nelson MC, Chen PH, Graf J, Li Y, Yu Z
Bioresour. Technol. (2015) 200:744-52 - Complementary Effects of Host Defense Peptides Piscidin 1 and Piscidin 3 on DNA and Lipid Membranes: Biophysical Insights into Contrasting Biological Activities.
Hayden RM, Goldberg GK, Ferguson BM, Schoeneck MW, Libardo MD, Mayeux SE, Shrestha A, Bogardus KA, Hammer J, Pryshchep S, Lehman HK, McCormick ML, Blazyk J, Angeles-Boza AM, Fu R, Cotten ML
J Phys Chem B (2015) 119(49):15235-46 - Global Changes in Mycoplasma gallisepticum Phase-Variable Lipoprotein Gene vlhA Expression during In Vivo Infection of the Natural Chicken Host.
Pflaum K, Tulman ER, Beaudet J, Liao X, Geary SJ
Infect. Immun. (2015) 84(1):351-5 (PMC4693984) 10.1128/IAI.01092-15 - The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis.
Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D
Science (2015) 350(6261):691-4 10.1126/science.aad0408 - Comparison of Xenorhabdus bovienii bacterial strain genomes reveals diversity in symbiotic functions.
Murfin KE, Whooley AC, Klassen JL, Goodrich-Blair H
BMC Genomics (2015) 16:889 (PMC4630870) - A systematic review of syphilis serological treatment outcomes in HIV-infected and HIV-uninfected persons: rethinking the significance of serological non-responsiveness and the serofast state after therapy.
Seña AC, Zhang XH, Li T, Zheng HP, Yang B, Yang LG, Salazar JC, Cohen MS, Moody MA, Radolf JD, Tucker JD
BMC Infect. Dis. (2015) 15:479 (PMC4625448) - Niche differentiation of bacterial communities at a millimeter scale in Shark Bay microbial mats.
Wong HL, Smith DL, Visscher PT, Burns BP
Sci Rep (2015) 5:15607 (PMC4620479) - Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini).
Marshall DC, Hill KB, Moulds M, Vanderpool D, Cooley JR, Mohagan AB, Simon C
Syst. Biol. (2015) 65(1):16-34 10.1093/sysbio/syv069 - Water and Small-Molecule Permeation of Dormant Bacillus subtilis Spores.
Knudsen SM, Cermak N, Delgado FF, Setlow B, Setlow P, Manalis SR
J. Bacteriol. (2015) 198(1):168-77 (PMC4686191) - Dynein Light Chain LC8 Is Required for RNA Polymerase I-Mediated Transcription in Trypanosoma brucei, Facilitating Assembly and Promoter Binding of Class I Transcription Factor A.
Kirkham JK, Park SH, Nguyen TN, Lee JH, Günzl A
Mol. Cell. Biol. (2015) 36(1):95-107 (PMC4702606) - Plasma membrane restricted RhoGEF activity is sufficient for RhoA-mediated actin polymerization.
van Unen J, Reinhard NR, Yin T, Wu YI, Postma M, Gadella TW, Goedhart J
Sci Rep (2015) 5:14693 (PMC4592971) 10.1038/srep14693 - Treponema pallidum in Gel Microdroplets: A Method for Topological Analysis of BamA (TP0326) and Localization of Rare Outer Membrane Proteins.
Luthra A, Anand A, Radolf JD
Methods Mol. Biol. (2015) 1329:67-75 - Widespread positive but weak assortative mating by diet within stickleback populations.
Ingram T, Jiang Y, Rangel R, Bolnick DI
Ecol Evol (2015) 5(16):3352-63 (PMC4569031) - Rapidly diverging evolution of an atypical alkaline phosphatase (PhoA(aty)) in marine phytoplankton: insights from dinoflagellate alkaline phosphatases.
Lin X, Wang L, Shi X, Lin S
Front Microbiol (2015) 6:868 (PMC4548154) 10.3389/fmicb.2015.00868 - Labelling and optical erasure of synaptic memory traces in the motor cortex.
Hayashi-Takagi A, Yagishita S, Nakamura M, Shirai F, Wu YI, Loshbaugh AL, Kuhlman B, Hahn KM, Kasai H
Nature (2015) 525(7569):333-8 (PMC4634641) 10.1038/nature15257 - Structural characterization and modeling of the Borrelia burgdorferi hybrid histidine kinase Hk1 periplasmic sensor: A system for sensing small molecules associated with tick feeding.
Bauer WJ, Luthra A, Zhu G, Radolf JD, Malkowski MG, Caimano MJ
J. Struct. Biol. (2015) 192(1):48-58 (PMC4605270) - Fighting Ebola with novel spore decontamination technologies for the military.
Doona CJ, Feeherry FE, Kustin K, Olinger GG, Setlow P, Malkin AJ, Leighton T
Front Microbiol (2015) 6:663 (PMC4533522) - Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia.
Campbell MA, Van Leuven JT, Meister RC, Carey KM, Simon C, McCutcheon JP
Proc. Natl. Acad. Sci. U.S.A. (2015) 112(33):10192-9 (PMC4547289) 10.1073/pnas.1421386112 - Identification of iron and heme utilization genes in Aeromonas and their role in the colonization of the leech digestive tract.
Maltz M, LeVarge BL, Graf J
Front Microbiol (2015) 6:763 (PMC4516982) - The pan-genome as a shared genomic resource: mutual cheating, cooperation and the black queen hypothesis.
Fullmer MS, Soucy SM, Gogarten JP
Front Microbiol (2015) 6:728 (PMC4523029) - Minimum Information about a Biosynthetic Gene cluster.
Medema MH, Kottmann R, Yilmaz P, Cummings M, Biggins JB, Blin K, de Bruijn I, Chooi YH, Claesen J, Coates RC, Cruz-Morales P, Duddela S, Düsterhus S, Edwards DJ, Fewer DP, Garg N, Geiger C, Gomez-Escribano JP, Greule A, Hadjithomas M, Haines AS, Helfrich EJ, Hillwig ML, Ishida K, Jones AC, Jones CS, Jungmann K, Kegler C, Kim HU, Kötter P, Krug D, Masschelein J, Melnik AV, Mantovani SM, Monroe EA, Moore M, Moss N, Nützmann HW, Pan G, Pati A, Petras D, Reen FJ, Rosconi F, Rui Z, Tian Z, Tobias NJ, Tsunematsu Y, Wiemann P, Wyckoff E, Yan X, Yim G, Yu F, Xie Y, Aigle B, Apel AK, Balibar CJ, Balskus EP, Barona-Gómez F, Bechthold A, Bode HB, Borriss R, Brady SF, Brakhage AA, Caffrey P, Cheng YQ, Clardy J, Cox RJ, De Mot R, Donadio S, Donia MS, van der Donk WA, Dorrestein PC, Doyle S, Driessen AJ, Ehling-Schulz M, Entian KD, Fischbach MA, Gerwick L, Gerwick WH, Gross H, Gust B, Hertweck C, Höfte M, Jensen SE, Ju J, Katz L, Kaysser L, Klassen JL, Keller NP, Kormanec J, Kuipers OP, Kuzuyama T, Kyrpides NC, Kwon HJ, Lautru S, Lavigne R, Lee CY, Linquan B, Liu X, Liu W, Luzhetskyy A, Mahmud T, Mast Y, Méndez C, Metsä-Ketelä M, Micklefield J, Mitchell DA, Moore BS, Moreira LM, Müller R, Neilan BA, Nett M, Nielsen J, O'Gara F, Oikawa H, Osbourn A, Osburne MS, Ostash B, Payne SM, Pernodet JL, Petricek M, Piel J, Ploux O, Raaijmakers JM, Salas JA, Schmitt EK, Scott B, Seipke RF, Shen B, Sherman DH, Sivonen K, Smanski MJ, Sosio M, Stegmann E, Süssmuth RD, Tahlan K, Thomas CM, Tang Y, Truman AW, Viaud M, Walton JD, Walsh CT, Weber T, van Wezel GP, Wilkinson B, Willey JM, Wohlleben W, Wright GD, Ziemert N, Zhang C, Zotchev SB, Breitling R, Takano E, Glöckner FO
Nat. Chem. Biol. (2015) 11(9):625-31 (PMC5714517) - A Molecular Staple: D-Loops in the I Domain of Bacteriophage P22 Coat Protein Make Important Intercapsomer Contacts Required for Procapsid Assembly.
D'Lima NG, Teschke CM
J. Virol. (2015) 89(20):10569-79 (PMC4580156) - Metallothionein differentially affects the host response to Listeria infection both with and without an additional stress from cold-restraint.
Emeny RT, Kasten-Jolly J, Mondal T, Lynes MA, Lawrence DA
Cell Stress Chaperones (2015) 20(6):1013-22 (PMC4595426) - Photochemistry and Photobiology of the Spore Photoproduct: A 50-Year Journey.
Setlow P, Li L
Photochem. Photobiol. (2015) 91(6):1263-90 (PMC4631623) - An examination of the ingestion, bioaccumulation, and depuration of titanium dioxide nanoparticles by the blue mussel (Mytilus edulis) and the eastern oyster (Crassostrea virginica).
Doyle JJ, Ward JE, Mason R
Mar. Environ. Res. (2015) 110:45-52 10.1016/j.marenvres.2015.07.020 - Molecular phylogenetics, diversification, and systematics of Tibicen Latreille 1825 and allied cicadas of the tribe Cryptotympanini, with three new genera and emphasis on species from the USA and Canada(Hemiptera: Auchenorrhyncha: Cicadidae).
Hill KB, Marshall DC, Moulds MS, Simon C
Zootaxa (2015) 3985(2):219-51 10.11646/zootaxa.3985.2.3 - Early Life Experience and Gut Microbiome: The Brain-Gut-Microbiota Signaling System.
Cong X, Henderson WA, Graf J, McGrath JM
Adv Neonatal Care (2015) 15(5):314-23; quiz E1-2 (PMC4583334) - Structural Characterization of Interaction between Human Ubiquitin-specific Protease 7 and Immediate-Early Protein ICP0 of Herpes Simplex Virus-1.
Pozhidaeva AK, Mohni KN, Dhe-Paganon S, Arrowsmith CH, Weller SK, Korzhnev DM, Bezsonova I
J. Biol. Chem. (2015) 290(38):22907-18 (PMC4645603) 10.1074/jbc.M115.664805 - Inhibiting Microbial Toxins Using Plant-Derived Compounds and Plant Extracts.
Upadhyay A, Mooyottu S, Yin H, Nair MS, Bhattaram V, Venkitanarayanan K
Medicines (Basel) (2015) 2(3):186-211 (PMC5456214) - Bastimolide A, a Potent Antimalarial Polyhydroxy Macrolide from the Marine Cyanobacterium Okeania hirsuta.
Shao CL, Linington RG, Balunas MJ, Centeno A, Boudreau P, Zhang C, Engene N, Spadafora C, Mutka TS, Kyle DE, Gerwick L, Wang CY, Gerwick WH
J. Org. Chem. (2015) 80(16):7849-55 - Differences in rheotactic responses contribute to divergent habitat use between parapatric lake and stream threespine stickleback.
Jiang Y, Torrance L, Peichel CL, Bolnick DI
Evolution (2015) 69(9):2517-24 - Controlling Aspergillus flavus and Aspergillus parasiticus growth and aflatoxin production in poultry feed using carvacrol and trans-cinnamaldehyde.
Yin HB, Chen CH, Kollanoor-Johny A, Darre MJ, Venkitanarayanan K
Poult. Sci. (2015) 94(9):2183-90 - An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages.
Yuan J, Li M, Lin S
PLoS ONE (2015) 10(7):e0133060 (PMC4517865) 10.1371/journal.pone.0133060 - Inner workings of thrombolites: spatial gradients of metabolic activity as revealed by metatranscriptome profiling.
Mobberley JM, Khodadad CL, Visscher PT, Reid RP, Hagan P, Foster JS
Sci Rep (2015) 5:12601 (PMC4515876) - HSV-I and the cellular DNA damage response.
Smith S, Weller SK
Future Virol (2015) 10(4):383-397 (PMC4508672) 10.2217/fvl.15.18 - Involvement of Coat Proteins in Bacillus subtilis Spore Germination in High-Salinity Environments.
Nagler K, Setlow P, Reineke K, Driks A, Moeller R
Appl. Environ. Microbiol. (2015) 81(19):6725-35 (PMC4561714) - Horizontal gene transfer: building the web of life.
Soucy SM, Huang J, Gogarten JP
Nat. Rev. Genet. (2015) 16(8):472-82 - Unlocking the Sporicidal Potential of Ethanol: Induced Sporicidal Activity of Ethanol against Clostridium difficile and Bacillus Spores under Altered Physical and Chemical Conditions.
Nerandzic MM, Sunkesula VC, C TS, Setlow P, Donskey CJ
PLoS ONE (2015) 10(7):e0132805 (PMC4503543) - Reducing Colonization and Eggborne Transmission of Salmonella Enteritidis in Layer Chickens by In-Feed Supplementation of Caprylic Acid.
Upadhyaya I, Upadhyay A, Yin HB, Nair MS, Bhattaram VK, Karumathil D, Kollanoor-Johny A, Khan MI, Darre MJ, Curtis PA, Venkitanarayanan K
Foodborne Pathog. Dis. (2015) 12(7):591-7 - Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae).
Ji N, Li L, Lin L, Lin S
PLoS ONE (2015) 10(7):e0132183 (PMC4489630) 10.1371/journal.pone.0132183 - Among-lake reciprocal transplants induce convergent expression of immune genes in threespine stickleback.
Stutz WE, Schmerer M, Coates JL, Bolnick DI
Mol. Ecol. (2015) 24(18):4629-46 - A local VE-cadherin and Trio-based signaling complex stabilizes endothelial junctions through Rac1.
Timmerman I, Heemskerk N, Kroon J, Schaefer A, van Rijssel J, Hoogenboezem M, van Unen J, Goedhart J, Gadella TW, Yin T, Wu Y, Huveneers S, van Buul JD
J. Cell. Sci. (2015) 128(16):3041-54 10.1242/jcs.168674 - Spore Resistance Properties.
Setlow P
Microbiol Spectr (2015) 2(5): - A method to investigate protein association with intact sealed mycobacterial membrane vesicles.
D'Lima NG, Teschke CM
Anal. Biochem. (2015) 485:109-11 - Nonracemic Antifolates Stereoselectively Recruit Alternate Cofactors and Overcome Resistance in S. aureus.
Keshipeddy S, Reeve SM, Anderson AC, Wright DL
J. Am. Chem. Soc. (2015) 137(28):8983-90 (PMC4733634) 10.1021/jacs.5b01442 - Effect of organic loading on the microbiota in a temperature-phased anaerobic digestion (TPAD) system co-digesting dairy manure and waste whey.
Li YF, Abraham C, Nelson MC, Chen PH, Graf J, Yu Z
Appl. Microbiol. Biotechnol. (2015) 99(20):8777-92 - Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum.
Shi X, Li L, Guo C, Lin X, Li M, Lin S
Front Microbiol (2015) 6:555 (PMC4451421) 10.3389/fmicb.2015.00555 - Recessive nephrocerebellar syndrome on the Galloway-Mowat syndrome spectrum is caused by homozygous protein-truncating mutations of WDR73.
Jinks RN, Puffenberger EG, Baple E, Harding B, Crino P, Fogo AB, Wenger O, Xin B, Koehler AE, McGlincy MH, Provencher MM, Smith JD, Tran L, Al Turki S, Chioza BA, Cross H, Harlalka GV, Hurles ME, Maroofian R, Heaps AD, Morton MC, Stempak L, Hildebrandt F, Sadowski CE, Zaritsky J, Campellone K, Morton DH, Wang H, Crosby A, Strauss KA
Brain (2015) 138(Pt 8):2173-90 (PMC4511861) 10.1093/brain/awv153 - End stage renal disease as a modifier of the periodontal microbiome.
Araújo MV, Hong BY, Fava PL, Khan S, Burleson JA, Fares G, Samson W, Strausbaugh LD, Diaz PI, Ioannidou E
BMC Nephrol (2015) 16:80 (PMC4460699) - Microbial diversity of hypersaline environments: a metagenomic approach.
Ventosa A, de la Haba RR, Sánchez-Porro C, Papke RT
Curr. Opin. Microbiol. (2015) 25:80-7 - WormGUIDES: an interactive single cell developmental atlas and tool for collaborative multidimensional data exploration.
Santella A, Catena R, Kovacevic I, Shah P, Yu Z, Marquina-Solis J, Kumar A, Wu Y, Schaff J, Colón-Ramos D, Shroff H, Mohler WA, Bao Z
BMC Bioinformatics (2015) 16:189 (PMC4459063) 10.1186/s12859-015-0627-8 - Xenorhabdus bovienii Strain Diversity Impacts Coevolution and Symbiotic Maintenance with Steinernema spp. Nematode Hosts.
Murfin KE, Lee MM, Klassen JL, McDonald BR, Larget B, Forst S, Stock SP, Currie CR, Goodrich-Blair H
MBio (2015) 6(3):e00076 (PMC4462624) - Bird biodiversity assessments in temperate forest: the value of point count versus acoustic monitoring protocols.
Klingbeil BT, Willig MR
PeerJ (2015) 3:e973 (PMC4451018) - Self-sustained reduction of multiple metals in a microbial fuel cell-microbial electrolysis cell hybrid system.
Li Y, Wu Y, Liu B, Luan H, Vadas T, Guo W, Ding J, Li B
Bioresour. Technol. (2015) 192:238-46 10.1016/j.biortech.2015.05.030 - Population-Specific Covariation between Immune Function and Color of Nesting Male Threespine Stickleback.
Bolnick DI, Shim KC, Schmerer M, Brock CD
PLoS ONE (2015) 10(6):e0126000 (PMC4454680) - Efficacy of fumigation with Trans-cinnamaldehyde and eugenol in reducing Salmonella enterica serovar Enteritidis on embryonated egg shells.
Upadhyaya I, Yin HB, Nair MS, Chen CH, Upadhyay A, Darre MJ, Venkitanarayanan K
Poult. Sci. (2015) 94(7):1685-90 - Location and stoichiometry of the protease CspB and the cortex-lytic enzyme SleC in Clostridium perfringens spores.
Banawas S, Korza G, Paredes-Sabja D, Li Y, Hao B, Setlow P, Sarker MR
Food Microbiol. (2015) 50:83-7 - Getting a hold on archaeal type IV pili: an expanding repertoire of cellular appendages implicates complex regulation and diverse functions.
Chimileski S, Papke RT
Front Microbiol (2015) 6:362 (PMC4419858) - Horizontal gene transfer, dispersal and haloarchaeal speciation.
Papke RT, Corral P, Ram-Mohan N, de la Haba RR, Sánchez-Porro C, Makkay A, Ventosa A
Life (Basel) (2015) 5(2):1405-26 (PMC4500145) - Cyclic di-GMP modulates gene expression in Lyme disease spirochetes at the tick-mammal interface to promote spirochete survival during the blood meal and tick-to-mammal transmission.
Caimano MJ, Dunham-Ems S, Allard AM, Cassera MB, Kenedy M, Radolf JD
Infect. Immun. (2015) 83(8):3043-60 (PMC4496621) - Microbiome profiles in periodontitis in relation to host and disease characteristics.
Hong BY, Furtado Araujo MV, Strausbaugh LD, Terzi E, Ioannidou E, Diaz PI
PLoS ONE (2015) 10(5):e0127077 (PMC4436126) - Female stickleback prefer shallow males: Sexual selection on nest microhabitat.
Bolnick DI, Shim KC, Brock CD
Evolution (2015) 69(6):1643-1653 - Preface to the proceedings of Halophiles 2013.
Papke RT
Front Microbiol (2015) 6:341 (PMC4406061) - Characterization of the Dynamic Germination of Individual Clostridium difficile Spores Using Raman Spectroscopy and Differential Interference Contrast Microscopy.
Wang S, Shen A, Setlow P, Li YQ
J. Bacteriol. (2015) 197(14):2361-73 (PMC4524193) - Long-Term Exposure to House Dust Mite Leads to the Suppression of Allergic Airway Disease Despite Persistent Lung Inflammation.
Bracken SJ, Adami AJ, Szczepanek SM, Ehsan M, Natarajan P, Guernsey LA, Shahriari N, Rafti E, Matson AP, Schramm CM, Thrall RS
Int. Arch. Allergy Immunol. (2015) 166(4):243-58 (PMC4485530) 10.1159/000381058 - Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota.
Smith CC, Snowberg LK, Gregory Caporaso J, Knight R, Bolnick DI
ISME J (2015) 9(11):2515-26 (PMC4611514) - Genome-wide DNA methylation analysis of Haloferax volcanii H26 and identification of DNA methyltransferase related PD-(D/E)XK nuclease family protein HVO_A0006.
Ouellette M, Jackson L, Chimileski S, Papke RT
Front Microbiol (2015) 6:251 (PMC4389544) - Hybrid peptide ATCUN-sh-Buforin: Influence of the ATCUN charge and stereochemistry on antimicrobial activity.
Libardo MD, Paul TJ, Prabhakar R, Angeles-Boza AM
Biochimie (2015) 113:143-55 - Ancient horizontal gene transfer and the last common ancestors.
Fournier GP, Andam CP, Gogarten JP
BMC Evol. Biol. (2015) 15:70 (PMC4427996) - Regulation of VDR Expression in Apc-Mutant Mice, Human Colon Cancers and Adenomas.
Giardina C, Nakanishi M, Khan A, Kuratnik A, Xu W, Brenner B, Rosenberg DW
Cancer Prev Res (Phila) (2015) 8(5):387-99 (PMC4417398) - Measuring propargyl-linked drug populations inside bacterial cells, and their interaction with a dihydrofolate reductase target, by Raman microscopy.
Heidari-Torkabadi H, Che T, Lombardo MN, Wright DL, Anderson AC, Carey PR
Biochemistry (2015) 54(17):2719-26 10.1021/acs.biochem.5b00202 - Nature's favorite building block: Deciphering folding and capsid assembly of proteins with the HK97-fold.
Suhanovsky MM, Teschke CM
Virology (2015) 479-480:487-97 (PMC4424165) - Interplay between chemotaxis and contact inhibition of locomotion determines exploratory cell migration.
Lin B, Yin T, Wu YI, Inoue T, Levchenko A
Nat Commun (2015) 6:6619 (PMC4391292) 10.1038/ncomms7619 - Modulation of pumping rate by two species of marine bivalve molluscs in response to neurotransmitters: Comparison of in vitro and in vivo results.
Frank DM, Deaton L, Shumway SE, Holohan BA, Ward JE
Comp. Biochem. Physiol., Part A Mol. Integr. Physiol. (2015) 185:150-8 10.1016/j.cbpa.2015.03.015 - Isolation and characterization of microsatellite markers useful for exploring introgression among species in the diverse New Zealand cicada genus Kikihia.
Wade EJ, Simon C
J. Insect Sci. (2015) 15: (PMC4535467) 10.1093/jisesa/iev016 - Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the dinoflagellate Gambierdiscus (Dinophyceae).
Gómez F, Qiu D, Lopes RM, Lin S
PLoS ONE (2015) 10(4):e0119676 (PMC4382304) 10.1371/journal.pone.0119676 - A Homology Model Reveals Novel Structural Features and an Immunodominant Surface Loop/Opsonic Target in the Treponema pallidum BamA Ortholog TP_0326.
Luthra A, Anand A, Hawley KL, LeDoyt M, La Vake CJ, Caimano MJ, Cruz AR, Salazar JC, Radolf JD
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Front Microbiol (2015) 6:123 (PMC4337385) - Intracellular Oceanospirillales inhabit the gills of the hydrothermal vent snail Alviniconcha with chemosynthetic, γ-Proteobacterial symbionts.
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Environ Microbiol Rep (2015) 6(6):656-64 - Anticarcinogenic properties of medium chain fatty acids on human colorectal, skin and breast cancer cells in vitro.
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Nature (2015) 518(7539):317-30 (PMC4530010) - The effects of heat activation on Bacillus spore germination, with nutrients or under high pressure, with or without various germination proteins.
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Anal. Chem. (2010) 82(20):8717-24 - Role of acetyl-phosphate in activation of the Rrp2-RpoN-RpoS pathway in Borrelia burgdorferi.
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PLoS Pathog. (2010) 6(9):e1001104 (PMC2940757) - ATR and ATRIP are recruited to herpes simplex virus type 1 replication compartments even though ATR signaling is disabled.
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J. Virol. (2010) 84(23):12152-64 (PMC2976399) 10.1128/JVI.01643-10 - Znu is the predominant zinc importer in Yersinia pestis during in vitro growth but is not essential for virulence.
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Infect. Immun. (2010) 78(12):5163-77 (PMC2981304) - Characterization of a two-component regulatory system that regulates succinate-mediated catabolite repression in Sinorhizobium meliloti.
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Biol. Bull. (2010) 219(1):61-71 10.1086/BBLv219n1p61 - Role of epicellular molecules in the selection of particles by the blue mussel, Mytilus edulis.
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IEEE/ACM Trans Comput Biol Bioinform (2010) 8(3):848-50 - Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.
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Oecologia (2010) 165(2):357-68 - Determinants of bacteriophage P22 polyhead formation: the role of coat protein flexibility in conformational switching.
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Food Microbiol. (2010) 27(6):841-4 - Effect of subinhibitory concentrations of plant-derived molecules in increasing the sensitivity of multidrug-resistant Salmonella enterica serovar Typhimurium DT104 to antibiotics.
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Foodborne Pathog. Dis. (2010) 7(10):1165-70 - Introgression at differentially aged hybrid zones in red-tailed chipmunks.
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Genetica (2010) 138(8):869-83 10.1007/s10709-010-9470-z - The pre-mRNA splicing machinery of trypanosomes: complex or simplified?
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Eukaryotic Cell (2010) 9(8):1159-70 (PMC2918933) - Phylogenetic and evolutionary patterns in microbial carotenoid biosynthesis are revealed by comparative genomics.
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PLoS ONE (2010) 5(6):e11257 (PMC2889829) - Identification of rep-associated factors in herpes simplex virus type 1-induced adeno-associated virus type 2 replication compartments.
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Bioinformatics (2010) 26(12):i140-8 (PMC2881383) 10.1093/bioinformatics/btq198 - Identification of lipoprotein MslA as a neoteric virulence factor of Mycoplasma gallisepticum.
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Infect. Immun. (2010) 78(8):3475-83 (PMC2916287) 10.1128/IAI.00154-10 - Secondary syphilis in cali, Colombia: new concepts in disease pathogenesis.
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PLoS Negl Trop Dis (2010) 4(5):e690 (PMC2872645) - Photophysical properties, DNA photocleavage, and photocytotoxicity of a series of dppn dirhodium(II,II) complexes.
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Inorg Chem (2010) 49(12):5371-6 - Biased gene transfer mimics patterns created through shared ancestry.
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Proc. Natl. Acad. Sci. U.S.A. (2010) 107(23):10679-84 (PMC2890805) - Biogeochemical cycling and microbial diversity in the thrombolitic microbialites of Highborne Cay, Bahamas.
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Geobiology (2010) 8(4):337-54 - Antibiofilm effect of trans-cinnamaldehyde on uropathogenic Escherichia coli.
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Ecology (2010) 91(4):1025-34 - Inactivation of Escherichia coli O157:H7 in apple juice and apple cider by trans-cinnamaldehyde.
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Int. J. Food Microbiol. (2010) 141(1-2):126-9 - Diversity of oligotrichia and choreotrichia ciliates in coastal marine sediments and in overlying plankton.
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J. Bacteriol. (2010) 192(13):3424-33 (PMC2897682) - Using comparative genome analysis to identify problems in annotated microbial genomes.
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Microbiology (Reading, Engl.) (2010) 156(Pt 7):1909-17 - Identification of 'Candidatus Piscichlamydia salmonis' in Arctic charr Salvelinus alpinus during a survey of charr production facilities in North America.
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Proc. Natl. Acad. Sci. U.S.A. (2010) 107(14):6240-5 (PMC2851974) - 'Let the phage do the work': using the phage P22 coat protein structures as a framework to understand its folding and assembly mutants.
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Virology (2010) 401(2):119-30 (PMC2862144) - A nucleator arms race: cellular control of actin assembly.
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PLoS ONE (2010) 5(3):e9545 (PMC2832698) 10.1371/journal.pone.0009545 - Filling the gaps in the genomic landscape.
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Genome Biol. (2010) 11(2):103 (PMC2872866) - Inferring the ancient history of the translation machinery and genetic code via recapitulation of ribosomal subunit assembly orders.
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BMC Bioinformatics (2010) 11 Suppl 1:S42 (PMC3009515) - Foraging trait (co)variances in stickleback evolve deterministically and do not predict trajectories of adaptive diversification.
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Evolution (2010) 64(8):2265-77 - Rooting the ribosomal tree of life.
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Mol. Biol. Evol. (2010) 27(8):1792-801 - Robinson-Foulds supertrees.
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Algorithms Mol Biol (2010) 5:18 (PMC2846952) - Ecological release from interspecific competition leads to decoupled changes in population and individual niche width.
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Proc. Biol. Sci. (2010) 277(1689):1789-97 (PMC2871882) - Isolation and Characterization of Aromatase Inhibitors from Brassaiopsis glomerulata (Araliaceae).
Balunas MJ, Su B, Riswan S, Fong HH, Brueggemeier RW, Pezzuto JM, Kinghorn AD
Phytochem Lett (2010) 2(1):29-33 (PMC2748821) - Obtaining hemocytes from the Hawaiian bobtail squid Euprymna scolopes and observing their adherence to symbiotic and non-symbiotic bacteria.
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J Vis Exp (2010) (36): (PMC2830252) 10.3791/1714 - Caprylic Acid reduces enteric campylobacter colonization in market-aged broiler chickens but does not appear to alter cecal microbial populations.
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J. Food Prot. (2010) 73(2):251-7 - Transcriptional patterns in both host and bacterium underlie a daily rhythm of anatomical and metabolic change in a beneficial symbiosis.
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Proc. Natl. Acad. Sci. U.S.A. (2010) 107(5):2259-64 (PMC2836665) 10.1073/pnas.0909712107 - Comparative genomic analyses of attenuated strains of Mycoplasma gallisepticum.
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Infect. Immun. (2010) 78(4):1760-71 (PMC2849401) 10.1128/IAI.01172-09 - Ciliate diversity and distribution across an environmental and depth gradient in Long Island Sound, USA.
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Cell Host Microbe (2010) 7(1):1-2 10.1016/j.chom.2009.12.006 - Characterization of wet-heat inactivation of single spores of bacillus species by dual-trap Raman spectroscopy and elastic light scattering.
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FEMS Microbiol. Ecol. (2010) 71(3):341-50 - Superdormant spores of bacillus species germinate normally with high pressure, peptidoglycan fragments, and bryostatin.
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Astrobiology (2009) 9(9):861-74 - Hyperbaric oxygen induces a cytoprotective and angiogenic response in human microvascular endothelial cells.
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BMC Genomics (2009) 10:468 (PMC2770080) - Pathway evolution by horizontal transfer and positive selection is accommodated by relaxed negative selection upon upstream pathway genes in purple bacterial carotenoid biosynthesis.
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Proc. Natl. Acad. Sci. U.S.A. (2003) 100(7):4209-14 (PMC404470) - Mechanisms of anemia in SHP-1 protein tyrosine phosphatase-deficient "viable motheaten" mice.
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Astrobiology (2003) 2(4):417-25 - Inhibition of transcription in vitro by anticancer active dirhodium(II) complexes.
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Biochemistry (2002) 41(38):11325-30 - Establishment and characterization of a new osteogenic cell line (MOS-J) from a spontaneous C57BL/6J mouse osteosarcoma.
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