Publications: Sarah Hird

• 2023

• Deciphering the ecoevolutionary recipe of milk microbiomes.
  Hird SM
  Trends in ecology & evolution (2023) 38(11):1019-1021 10.1016/j.tree.2023.09.004
• Body Size Poorly Predicts Host-Associated Microbial Diversity in Wild Birds.
  Herder EA, Skeen HR, Lutz HL, Hird SM
  Microbiology spectrum (2023) 11(3):e0374922 PMC6313546 10.1016/j.syapm.2017.09.005
• Functional and Compositional Changes in the Fecal Microbiome of a Shorebird during Migratory Stopover.
  Grond K, Louyakis AS, Hird SM
  mSystems (2023) 8(2):e0112822 PMC4302049 10.1186/s13059-014-0550-8

• 2021

• Playing by their own rules: the vertebrate archaeome.
  Hird SM
  Trends in microbiology (2021) 30(2):102-103 10.1016/j.tim.2021.12.002
• Sex Differences in Gut Microbial Development of Preterm Infant Twins in Early Life: A Longitudinal Analysis.
  Chen J, Li H, Hird SM, Chen MH, Xu W, Maas K, Cong X
  Frontiers in cellular and infection microbiology (2021) 11:671074 PMC8387566 10.3389/fcimb.2021.671074
• Avian gut microbiomes taking flight.
  Bodawatta KH, Hird SM, Grond K, Poulsen M, Jønsson KA
  Trends in microbiology (2021) 30(3):268-280 10.1016/j.tim.2021.07.003
• Red Fluorescence of European Hedgehog (Erinaceus europaeus) Spines Results from Free-Base Porphyrins of Potential Microbial Origin.
  Hamchand R, Lafountain AM, Büchel R, Maas KR, Hird SM, Warren M, Frank HA, Brückner C
  Journal of chemical ecology (2021) 47(6):588-596 10.1128/mBio.01286-14

• 2020

• microbiome correlates with life stage, not the presence of human pathogens, in ticks submitted for diagnostic testing.
  Gil JC, Helal ZH, Risatti G, Hird SM
  PeerJ (2020) 8:e10424 PMC7718787 10.7717/peerj.10424
• Spatial heterogeneity of the shorebird gastrointestinal microbiome.
  Grond K, Guilani H, Hird SM
  Royal Society open science (2020) 7(1):191609 PMC7029916 10.1098/rsos.191609
• Context Is Key: Comparative Biology Illuminates the Vertebrate Microbiome.
  Hird SM
  mBio (2020) 11(2): PMC7064755 10.1128/mBio.00153-20

• 2019

• No evidence for phylosymbiosis in western chipmunk species.
  Grond K, Bell KC, Demboski JR, Santos M, Sullivan JM, Hird SM
  FEMS microbiology ecology (2019) 96(1): 10.1093/femsec/fiz182
• Correction: Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.
  Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM
  PloS one (2019) 14(7):e0220347 PMC6650065 10.1371/journal.pone.0220347
• Microbiomes, Community Ecology, and the Comparative Method.
  Hird SM
  mSystems (2019) 4(3): PMC6533377 10.1128/mSystems.00112-19
• Longitudinal microbiome profiling reveals impermanence of probiotic bacteria in domestic pigeons.
  Grond K, Perreau JM, Loo WT, Spring AJ, Cavanaugh CM, Hird SM
  PloS one (2019) 14(6):e0217804 PMC6578490 10.1371/journal.pone.0217804
• Microbial Community Succession and Nutrient Cycling Responses following Perturbations of Experimental Saltwater Aquaria.
  Bik HM, Alexiev A, Aulakh SK, Bharadwaj L, Flanagan J, Haggerty JM, Hird SM, Jospin G, Lang JM, Sauder LA, Neufeld JD, Shaver A, Sethi A, Eisen JA, Coil DA
  mSphere (2019) 4(1): (PMC6382968) 10.1128/mSphere.00043-19

• 2018

• The Cloacal Microbiome of Five Wild Duck Species Varies by Species and Influenza A Virus Infection Status.
  Hird SM, Ganz H, Eisen JA, Boyce WM
  mSphere (2018) 3(5): (PMC6200988) 10.1128/mSphere.00382-18

• 2017

• Evolutionary Biology Needs Wild Microbiomes.
  Hird SM
  Front Microbiol (2017) 8:725 (PMC5404107) 10.3389/fmicb.2017.00725
• Community-Level Differences in the Microbiome of Healthy Wild Mallards and Those Infected by Influenza A Viruses.
  Ganz HH, Doroud L, Firl AJ, Hird SM, Eisen JA, Boyce WM
  mSystems (2017) 2(1): (PMC5347185) 10.1128/mSystems.00188-16

• 2016

• Comparative Gut Microbiota of 59 Neotropical Bird Species.
  Hird SM, Sánchez C, Carstens BC, Brumfield RT
  Front Microbiol (2016) 6:1403 (PMC4685052) 10.3389/fmicb.2015.01403

• 2015

• Evolution of the indoor biome.
  Martin LJ, Adams RI, Bateman A, Bik HM, Hawks J, Hird SM, Hughes D, Kembel SW, Kinney K, Kolokotronis SO, Levy G, McClain C, Meadow JF, Medina RF, Mhuireach G, Moreau CS, Munshi-South J, Nichols LM, Palmer C, Popova L, Schal C, Täubel M, Trautwein M, Ugalde JA, Dunn RR
  Trends Ecol. Evol. (Amst.) (2015) 30(4):223-32 10.1016/j.tree.2015.02.001

• 2014

• Sampling locality is more detectable than taxonomy or ecology in the gut microbiota of the brood-parasitic Brown-headed Cowbird (Molothrus ater).
  Hird SM, Carstens BC, Cardiff SW, Dittmann DL, Brumfield RT
  PeerJ (2014) 2:e321 (PMC3970801) 10.7717/peerj.321

• 2013

• Poor fit to the multispecies coalescent is widely detectable in empirical data.
  Reid NM, Hird SM, Brown JM, Pelletier TA, McVay JD, Satler JD, Carstens BC
  Syst. Biol. (2013) 63(3):322-33 10.1093/sysbio/syt057

• 2012

• lociNGS: a lightweight alternative for assessing suitability of next-generation loci for evolutionary analysis.
  Hird SM
  PLoS ONE (2012) 7(10):e46847 (PMC3468592) 10.1371/journal.pone.0046847
• Deep phylogeographic structure and environmental differentiation in the carnivorous plant Sarracenia alata.
  Zellmer AJ, Hanes MM, Hird SM, Carstens BC
  Syst. Biol. (2012) 61(5):763-77 10.1093/sysbio/sys048

• 2011

• Applications of next-generation sequencing to phylogeography and phylogenetics.
  McCormack JE, Hird SM, Zellmer AJ, Carstens BC, Brumfield RT
  Mol. Phylogenet. Evol. (2011) 66(2):526-38 10.1016/j.ympev.2011.12.007
• Next-generation sequencing reveals phylogeographic structure and a species tree for recent bird divergences.
  McCormack JE, Maley JM, Hird SM, Derryberry EP, Graves GR, Brumfield RT
  Mol. Phylogenet. Evol. (2011) 62(1):397-406 10.1016/j.ympev.2011.10.012
• PRGmatic: an efficient pipeline for collating genome-enriched second-generation sequencing data using a 'provisional-reference genome'.
  Hird SM, Brumfield RT, Carstens BC
  Mol Ecol Resour (2011) 11(4):743-8 10.1111/j.1755-0998.2011.03005.x

• 2010

• Rapid and accurate species tree estimation for phylogeographic investigations using replicated subsampling.
  Hird S, Kubatko L, Carstens B
  Mol. Phylogenet. Evol. (2010) 57(2):888-98 10.1016/j.ympev.2010.08.006
• Introgression at differentially aged hybrid zones in red-tailed chipmunks.
  Hird S, Reid N, Demboski J, Sullivan J
  Genetica (2010) 138(8):869-83 10.1007/s10709-010-9470-z
• The carnivorous pale pitcher plant harbors diverse, distinct, and time-dependent bacterial communities.
  Koopman MM, Fuselier DM, Hird S, Carstens BC
  Appl. Environ. Microbiol. (2010) 76(6):1851-60 (PMC2838028) 10.1128/AEM.02440-09

• 2009

• Assessment of gene flow across a hybrid zone in red-tailed chipmunks (Tamias ruficaudus).
  Hird S, Sullivan J
  Mol. Ecol. (2009) 18(14):3097-109 10.1111/j.1365-294X.2009.04196.x

• 2008

• Ancient hybridization and mitochondrial capture between two species of chipmunks.
  Good JM, Hird S, Reid N, Demboski JR, Steppan SJ, Martin-Nims TR, Sullivan J
  Mol. Ecol. (2008) 17(5):1313-27 10.1111/j.1365-294X.2007.03640.x

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