Publications: Senjie Lin

• 2024

• Shining light on dinoflagellate photosystem I.
  Lin S, Wu S, He J, Wang X, Grossman AR
  Nature communications (2024) 15(1):3337 PMC8689207 10.1093/gbe/evad237
• Dinoflagellate Proton-Pump Rhodopsin Genes in Long Island Sound: Diversity and Spatiotemporal Distribution.
  Zhang H, Nulick KJ, Burris Z, Pierce M, Ma M, Lin S
  Microorganisms (2024) 12(3): PMC10439184 10.3389/fmars.2019.00219
• community transcriptomics illuminates CO-fixation potentials and supporting roles of phagotrophy and proton pump in plankton in a subtropical marginal sea.
  Li H, Chen J, Yu L, Fan G, Li T, Li L, Yuan H, Wang J, Wang C, Li D, Lin S
  Microbiology spectrum (2024) 12(3):e0217723 PMC5600148 10.1038/ismej.2007.70
• Rhinoplasty Preferences: Can the Public Detect Prior Surgery on Social Media?
  Valentine L, Weidman AA, Stearns SA, Dennis D, Alvarez AH, Foppiani J, Lin SJ
  Aesthetic plastic surgery (2024) : 10.1007/s11606-017-4246-0
• Effects and mechanisms of glyphosate as phosphorus nutrient on element stoichiometry and metabolism in the diatom .
  Wang C, Li J, Li S, Lin S
  Applied and environmental microbiology (2024) 90(2):e0213123 PMC6852614 10.1038/30455
• Clustered Regularly Interspaced Short Palindromic Repeat/CRISPR-Associated Protein and Its Utility All at Sea: Status, Challenges, and Prospects.
  Li J, Wu S, Zhang K, Sun X, Lin W, Wang C, Lin S
  Microorganisms (2024) 12(1): PMC10440436 10.3389/fmicb.2023.1205765
• Glyphosate (Roundup) as phosphorus nutrient enhances carbon and nitrogen accumulation and up-regulates phosphorus metabolisms in the haptophyte Isochrysis galbana.
  Wang C, Zhang H, Wang J, Sprecher B, Lin S
  The Science of the total environment (2024) 913:169715 10.1016/j.scitotenv.2023.169715

• 2023

• Novel plastid genome characteristics in Fugacium kawagutii and the trend of accelerated evolution of plastid proteins in dinoflagellates.
  He J, Huang Y, Li L, Lin S, Ma M, Wang Y, Lin S
  Genome biology and evolution (2023) : 10.1093/gbe/evad237
• Alkaline Phosphatase PhoD Mutation Induces Fatty Acid and Long-Chain Polyunsaturated Fatty Acid (LC-PUFA)-Bound Phospholipid Production in the Model Diatom .
  Zhang K, Li J, Cheng J, Lin S
  Marine drugs (2023) 21(11): PMC3218662 10.1093/bioinformatics/btp612
• Active viral infection during blooms of a dinoflagellate indicates dinoflagellate-viral co-adaptation.
  Wang J, Li L, Lin S
  Applied and environmental microbiology (2023) 89(11):e0115623 PMC7931819 10.18637/jss.v025.i03
• Species-dependent effects of seawater acidification on alkaline phosphatase activity in dinoflagellates.
  Guo C, Li L, Lin S, Lin X
  Journal of phycology (2023) 59(6):1347-1352 10.1111/jpy.13398
• Phosphorus nutrition strategies in a Symbiodiniacean species: Implications in coral-alga symbiosis facing increasing phosphorus deficiency in future warmer oceans.
  Li J, Zhang K, Li L, Wang Y, Lin S
  Global change biology (2023) 29(23):6558-6571 10.1111/gcb.16945
• Two-sided effects of the organic phosphorus phytate on a globally important marine coccolithophorid phytoplankton.
  Li J, Zhang K, Li L, Wang Y, Wang C, Lin S
  Microbiology spectrum (2023) 11(5):e0125523 PMC3218662 10.1186/gb-2010-11-10-r106
• Role of diatom-derived oxylipins in organic phosphorus recycling during coastal diatom blooms in the northern South China Sea.
  Wu Z, Li QP, Rivkin RB, Lin S
  The Science of the total environment (2023) 903:166518 10.1016/j.scitotenv.2023.166518
• A comparative study reveals the relative importance of prokaryotic and eukaryotic proton pump rhodopsins in a subtropical marginal sea.
  Ma M, Li H, Wang C, Li T, Wang J, Yuan H, Yu L, Wang J, Li L, Lin S
  ISME communications (2023) 3(1):79 PMC3090418 10.1038/s43705-023-00292-y
• Phosphate limitation and ocean acidification co-shape phytoplankton physiology and community structure.
  Lin S
  Nature communications (2023) 14(1):2699 PMC5997998 10.1016/j.ecss.2016.11.016
• Building consensus around the assessment and interpretation of Symbiodiniaceae diversity.
  Davies SW, Gamache MH, Howe-Kerr LI, Kriefall NG, Baker AC, Banaszak AT, Bay LK, Bellantuono AJ, Bhattacharya D, Chan CX, Claar DC, Coffroth MA, Cunning R, Davy SK, Del Campo J, Díaz-Almeyda EM, Frommlet JC, Fuess LE, González-Pech RA, Goulet TL, Hoadley KD, Howells EJ, Hume BCC, Kemp DW, Kenkel CD, Kitchen SA, LaJeunesse TC, Lin S, McIlroy SE, McMinds R, Nitschke MR, Oakley CA, Peixoto RS, Prada C, Putnam HM, Quigley K, Reich HG, Reimer JD, Rodriguez-Lanetty M, Rosales SM, Saad OS, Sampayo EM, Santos SR, Shoguchi E, Smith EG, Stat M, Stephens TG, Strader ME, Suggett DJ, Swain TD, Tran C, Traylor-Knowles N, Voolstra CR, Warner ME, Weis VM, Wright RM, Xiang T, Yamashita H, Ziegler M, Correa AMS, Parkinson JE
  PeerJ (2023) 11:e15023 PMC5309854 10.1038/ncomms14213
• Molecular Ecological Analyses Illuminate Distinct Factors Regulating Formation and Demise of a Harmful Dinoflagellate Bloom.
  Yu L, Li T, Li H, Ma M, Li L, Lin S
  Microbiology spectrum (2023) 11(3):e0515722 PMC7334889 10.1038/nmeth.3176
• Phytoplankton and Microzooplankton Community Structure and Assembly Mechanisms in Northwestern Pacific Ocean Estuaries with Environmental Heterogeneity and Geographic Segregation.
  Sun Y, Li H, Wang X, Jin Y, Nagai S, Lin S
  Microbiology spectrum (2023) 11(2):e0492622 PMC3965112 10.1111/ecog.00986
• Unraveling the metabolic effects of benzophenone-3 on the endosymbiotic dinoflagellate .
  Zhang K, Shen Z, Yang W, Guo J, Yan Z, Li J, Lin J, Cao X, Tang J, Liu Z, Zhou Z, Lin S
  Frontiers in microbiology (2023) 13:1116975 PMC8233357 10.1016/j.ecoenv.2019.109953
• High Heterotrophic Plasticity of Massive Coral Contributes to Its Tolerance to Bioaccumulated Microplastics.
  Zhou Z, Tang J, Cao X, Wu C, Cai W, Lin S
  Environmental science & technology (2023) 57(8):3391-3401 10.1021/acs.est.2c08188
• High-throughput sequencing reveals omnivorous and preferential diets of the rotifer .
  Liang D, Luo H, Huang C, Ye Z, Sun S, Dong J, Liang M, Lin S, Yang Y
  Frontiers in microbiology (2023) 13:1048619 PMC4517865 10.1371/journal.pone.0133060

• 2022

• Photoresponsive polymeric microneedles: An innovative way to monitor and treat diseases.
  Singh P, Youden B, Carrier A, Oakes K, Servos M, Jiang R, Lin S, Nguyen TD, Zhang X
  Journal of controlled release : official journal of the Controlled Release Society (2022) 353:1050-1067 10.1016/j.jconrel.2022.12.036
• Isolation, identification and toxicity of three strains of Heterocapsa (Dinophyceae) in a harmful event in Fujian, China.
  Wu X, Liu Y, Weng Y, Li L, Lin S
  Harmful algae (2022) 120:102355 10.1016/j.hal.2022.102355
• Nondestructive and multiplex differentiation of pathogenic microorganisms from spoilage microflora on seafood using paper chromogenic array and neural network.
  Yang M, Luo Y, Sharma A, Jia Z, Wang S, Wang D, Lin S, Perreault W, Purohit S, Gu T, Dillow H, Liu X, Yu H, Zhang B
  Food research international (Ottawa, Ont.) (2022) 162(Pt B):112052 10.1016/j.foodres.2022.112052
• An ancient enzyme finds a new home: Prevalence and neofunctionalization of trypsin in marine phytoplankton.
  You Y, Sun X, Lin S
  Journal of phycology (2022) 59(1):152-166 10.1111/jpy.13300
• Molecular phylogeny of the spiny-surfaced species of the dinoflagellate Prorocentrum with the description of P. thermophilum sp. nov. and P. criophilum sp. nov. (Prorocentrales, Dinophyceae).
  Gómez F, Gourvil P, Li T, Huang Y, Zhang H, Courcot L, Artigas LF, Soler Onís E, Gutiérrez-Rodríguez A, Lin S
  Journal of phycology (2022) 59(1):70-86 10.1111/jpy.13298
• Active meiosis during dinoflagellate blooms: A 'sex for proliferation' hypothesis.
  Lin S, Yu L, Wu X, Li M, Zhang Y, Luo H, Li H, Li T, Li L
  Harmful algae (2022) 118:102307 10.1016/j.hal.2022.102307
• Transcriptomic and metabolic signatures of diatom plasticity to light fluctuations.
  Zhou L, Gao S, Yang W, Wu S, Huan L, Xie X, Wang X, Lin S, Wang G
  Plant physiology (2022) 190(4):2295-2314 PMC8015109 10.1093/plphys/kiac455
• Trypsin is a coordinate regulator of N and P nutrients in marine phytoplankton.
  You Y, Sun X, Ma M, He J, Li L, Porto FW, Lin S
  Nature communications (2022) 13(1):4022 PMC8788711 10.1128/AEM.02097-21
• Editorial: Physiological Regulation and Homeostasis Among Coral Holobiont Partners.
  Lin S, Yu K, Zhou Z
  Frontiers in physiology (2022) 13:921401 PMC8551165 10.1111/jpy.13156
• Genetic differentiation and phylogeography of rotifer and populations between Southeastern China and eastern North America: High intercontinental differences.
  Liang D, McManus GB, Wang Q, Sun X, Liu Z, Lin S, Yang Y
  Ecology and evolution (2022) 12(5):e8912 PMC3810850 10.1007/s10750-017-3407-9
• Functional differentiation and complementation of alkaline phosphatases and choreography of DOP scavenging in a marine diatom.
  Zhang K, Li J, Wang J, Lin X, Li L, You Y, Wu X, Zhou Z, Lin S
  Molecular ecology (2022) 31(12):3389-3399 10.1111/mec.16475
• Physiological and metabolic effects of glyphosate as the sole P source on a cosmopolitan phytoplankter and biogeochemical implications.
  Wang C, Sun X, Wang J, Tang JM, Gu Y, Lin S
  The Science of the total environment (2022) 832:155094 10.1016/j.scitotenv.2022.155094
• Clostridioides difficile Infection Dysregulates Brain Dopamine Metabolism.
  Vinithakumari AA, Padhi P, Hernandez B, Lin SJ, Dunkerson-Kurzhumov A, Showman L, Breitzman M, Stokes C, Sulaiman Y, Tangudu C, Kuttappan DA, Muyyarikkandy MS, Willette AA, Phillips GJ, Anantharam V, Perera A, Sponseller BA, Kanthasamy A, Mooyottu S
  Microbiology spectrum (2022) 10(2):e0007322 PMC4995106 10.1007/s11064-018-2653-1
• Interactive effects of acidification and copper exposure on the reproduction and metabolism of coral endosymbiont Cladocopium goreaui.
  Tang J, Cai W, Yan Z, Zhang K, Zhou Z, Zhao J, Lin S
  Marine pollution bulletin (2022) 177:113508 10.1016/j.marpolbul.2022.113508

• 2021

• Diversity Distribution, Driving Factors and Assembly Mechanisms of Free-Living and Particle-Associated Bacterial Communities at a Subtropical Marginal Sea.
  Yuan H, Li T, Li H, Wang C, Li L, Lin X, Lin S
  Microorganisms (2021) 9(12): PMC8223512 10.3389/fmolb.2021.685757
• Isolation from a fish kill and transcriptomic characterization of Gyrodinium jinhaense off Long Island Sound.
  Sprecher BN, Zhang H, Park G, Lin S
  Harmful algae (2021) 110:102136 10.1016/j.hal.2021.102136
• Phytate as a Phosphorus Nutrient with Impacts on Iron Stress-Related Gene Expression for Phytoplankton: Insights from the Diatom .
  Li J, Zhang K, Lin X, Li L, Lin S
  Applied and environmental microbiology (2021) 88(2):e0209721 10.1128/AEM.02097-21
• Spatial organization of dinoflagellate genomes: Novel insights and remaining critical questions.
  Lin S, Song B, Morse D
  Journal of phycology (2021) 57(6):1674-1678 10.1111/jpy.13206
• SPX-related genes regulate phosphorus homeostasis in the marine phytoplankton, Phaeodactylum tricornutum.
  Zhang K, Zhou Z, Li J, Wang J, Yu L, Lin S
  Communications biology (2021) 4(1):797 PMC8233357 10.1038/s42003-021-02284-x
• Transcriptomic and isotopic data reveal central role of ammonium in facilitating the growth of the mixotrophic dinoflagellate, Dinophysis acuminata.
  Hattenrath-Lehmann TK, Nanjappa D, Zhang H, Yu L, Goleski JA, Lin S, Gobler CJ
  Harmful algae (2021) 104:102031 10.1016/j.hal.2021.102031
• Nondestructive multiplex detection of foodborne pathogens with background microflora and symbiosis using a paper chromogenic array and advanced neural network.
  Jia Z, Luo Y, Wang D, Dinh QN, Lin S, Sharma A, Block EM, Yang M, Gu T, Pearlstein AJ, Yu H, Zhang B
  Biosensors & bioelectronics (2021) 183:113209 10.1016/j.bios.2021.113209
• Epigenetic effects of silver nanoparticles and ionic silver in Tetrahymena thermophila.
  Pan Y, Lin S, Zhang W
  The Science of the total environment (2021) 768:144659 10.1016/j.scitotenv.2020.144659
• Nitrogen availability improves the physiological resilience of coral endosymbiont Cladocopium goreaui to high temperature.
  Zhou Z, Zhang K, Wang L, Su Y, Wang J, Song T, Yang X, Tang J, Lin S
  Journal of phycology (2021) 57(4):1187-1198 10.1111/jpy.13156
• Evolution and roles of cytokinin genes in angiosperms 1: Do ancient IPTs play housekeeping while non-ancient IPTs play regulatory roles?
  Wang X, Lin S, Liu D, Gan L, McAvoy R, Ding J, Li Y
  Horticulture research (2021) 7(1):28 10.1371/journal.pone.0070603
• Roles of Alkaline Phosphatase PhoA in Algal Metabolic Regulation under Phosphorus-replete Conditions.
  Zhang K, Li J, Zhou Z, Huang R, Lin S
  Journal of phycology (2021) 57(3):703-707 10.1111/jpy.13151

• 2020

• Integrated RNA-seq and Proteomic Studies Reveal Resource Reallocation towards Energy Metabolism and Defense in in Response to CO Increase.
  Zhang M, Zhen Y, Mi T, Lin S
  Applied and environmental microbiology (2020) : PMC8090871 10.1128/AEM.02614-20
• Transcriptome profiling reveals versatile dissolved organic nitrogen utilization, mixotrophy, and N conservation in the dinoflagellate Prorocentrum shikokuense under N deficiency.
  Li H, Li L, Yu L, Yang X, Shi X, Wang J, Li J, Lin S
  The Science of the total environment (2020) 763:143013 10.1016/j.scitotenv.2020.143013
• Abundant synthesis of long-chain polyunsaturated fatty acids in Eutreptiella sp. (Euglenozoa) revealed by chromatographic and transcriptomic analyses.
  Kuo RC, Zhang H, Stuart JD, Provatas AA, Hannick L, Lin S
  Journal of phycology (2020) 57(2):577-591 10.1111/jpy.13105
• Differential enrichment and physiological impacts of ingested microplastics in scleractinian corals in situ.
  Tang J, Wu Z, Wan L, Cai W, Chen S, Wang X, Luo J, Zhou Z, Zhao J, Lin S
  Journal of hazardous materials (2020) 404(Pt B):124205 10.1016/j.jhazmat.2020.124205
• Methylation Pattern and Expression Dynamics of Methylase and Photosystem Genes Under varying light Intensities in Fugacium kawagutii (Symbiodiniaceae).
  Yang F, Li L, Lin S
  Journal of phycology (2020) 56(6):1738-1747 10.1111/jpy.13070
• Physiological and transcriptomic responses to N-deficiency and ammonium: Nitrate shift in Fugacium kawagutii (Symbiodiniaceae).
  Li T, Chen X, Lin S
  The Science of the total environment (2020) 753:141906 10.1016/j.scitotenv.2020.141906
• SAGER: a database of Symbiodiniaceae and Algal Genomic Resource.
  Yu L, Li T, Li L, Lin X, Li H, Liu C, Guo C, Lin S
  Database : the journal of biological databases and curation (2020) 2020: PMC7334889 10.1093/database/baaa051
• Genome Size, rDNA Copy, and qPCR Assays for Symbiodiniaceae.
  Saad OS, Lin X, Ng TY, Li L, Ang P, Lin S
  Frontiers in microbiology (2020) 11:847 PMC7264167 10.3389/fmicb.2020.00847
• Glycerol Utilization By Phytoplankton.
  Wang C, Baseler S, Lin S
  Journal of phycology (2020) 56(5):1157-1167 10.1111/jpy.13031
• High throughput sequencing of 18S rRNA and its gene to characterize a Prorocentrum shikokuense (Dinophyceae) bloom.
  Zhang Y, Lin X, Li T, Li H, Lin L, Luo H, Li L, Ji N, Lin S
  Harmful algae (2020) 94:101809 10.1016/j.hal.2020.101809
• Publisher Correction: Genetic tool development in marine protists: emerging model organisms for experimental cell biology.
  Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J
  Nature methods (2020) 17(5):551 PMC7200595 10.1038/s41592-020-0828-6
• Genetic tool development in marine protists: emerging model organisms for experimental cell biology.
  Faktorová D, Nisbet RER, Fernández Robledo JA, Casacuberta E, Sudek L, Allen AE, Ares M, Aresté C, Balestreri C, Barbrook AC, Beardslee P, Bender S, Booth DS, Bouget FY, Bowler C, Breglia SA, Brownlee C, Burger G, Cerutti H, Cesaroni R, Chiurillo MA, Clemente T, Coles DB, Collier JL, Cooney EC, Coyne K, Docampo R, Dupont CL, Edgcomb V, Einarsson E, Elustondo PA, Federici F, Freire-Beneitez V, Freyria NJ, Fukuda K, García PA, Girguis PR, Gomaa F, Gornik SG, Guo J, Hampl V, Hanawa Y, Haro-Contreras ER, Hehenberger E, Highfield A, Hirakawa Y, Hopes A, Howe CJ, Hu I, Ibañez J, Irwin NAT, Ishii Y, Janowicz NE, Jones AC, Kachale A, Fujimura-Kamada K, Kaur B, Kaye JZ, Kazana E, Keeling PJ, King N, Klobutcher LA, Lander N, Lassadi I, Li Z, Lin S, Lozano JC, Luan F, Maruyama S, Matute T, Miceli C, Minagawa J, Moosburner M, Najle SR, Nanjappa D, Nimmo IC, Noble L, Novák Vanclová AMG, Nowacki M, Nuñez I, Pain A, Piersanti A, Pucciarelli S, Pyrih J, Rest JS, Rius M, Robertson D, Ruaud A, Ruiz-Trillo I, Sigg MA, Silver PA, Slamovits CH, Jason Smith G, Sprecher BN, Stern R, Swart EC, Tsaousis AD, Tsypin L, Turkewitz A, Turnšek J, Valach M, Vergé V, von Dassow P, von der Haar T, Waller RF, Wang L, Wen X, Wheeler G, Woods A, Zhang H, Mock T, Worden AZ, Lukeš J
  Nature methods (2020) 17(5):481-494 PMC7200600 10.1038/s41592-020-0796-x
• Evolution and roles of cytokinin genes in angiosperms 1: Do ancient play housekeeping while non-ancient play regulatory roles?
  Wang X, Lin S, Liu D, Gan L, McAvoy R, Ding J, Li Y
  Horticulture research (2020) 7:28 PMC7049300 10.1038/s41438-019-0211-x
• Identification and expression analysis of meiosis-related genes in the harmful alga Heterosigma akashiwo (Raphidophyceae).
  Ji N, Huang J, Zhang Z, Zhou L, Shen X, Lin S
  Harmful algae (2020) 92:101736 10.1016/j.hal.2019.101736
• Utilization of various forms of nitrogen and expression regulation of transporters in the harmful alga Heterosigma akashiwo (Raphidophyceae).
  Ji N, Zhang Z, Huang J, Zhou L, Deng S, Shen X, Lin S
  Harmful algae (2020) 92:101770 10.1016/j.hal.2020.101770
• Characterizing ciguatoxin (CTX)- and Non-CTX-producing strains of Gambierdiscus balechii using comparative transcriptomics.
  Wu Z, Luo H, Yu L, Lee WH, Li L, Mak YL, Lin S, Lam PKS
  The Science of the total environment (2020) 717:137184 10.1016/j.scitotenv.2020.137184
• Transcriptomic and physiological responses of Skeletonema costatum to ATP utilization.
  Zhang X, Lin S, Liu D
  Environmental microbiology (2020) 22(5):1861-1869 10.1111/1462-2920.14944
• RNA-seq profiling of Fugacium kawagutii reveals strong responses in metabolic processes and symbiosis potential to deficiencies of iron and other trace metals.
  Li T, Lin X, Yu L, Lin S, Rodriguez IB, Ho TY
  The Science of the total environment (2020) 705:135767 10.1016/j.scitotenv.2019.135767
• Nuclear Gene Transformation in the Dinoflagellate .
  Sprecher BN, Zhang H, Lin S
  Microorganisms (2020) 8(1): PMC7022241 10.3390/microorganisms8010126

• 2019

• Microplastic exposure represses the growth of endosymbiotic dinoflagellate Cladocopium goreaui in culture through affecting its apoptosis and metabolism.
  Su Y, Zhang K, Zhou Z, Wang J, Yang X, Tang J, Li H, Lin S
  Chemosphere (2019) 244:125485 10.1016/j.chemosphere.2019.125485
• Illuminating the dark depths inside coral.
  Liu C, Cheng SH, Lin S
  Cellular microbiology (2019) 22(1):e13122 10.1111/cmi.13122
• Characterization and Expression Analysis of Genes in Suggest Different Divergences of Tandem Duplicates.
  Wang X, Lin S, Liu D, Wang Q, McAvoy R, Ding J, Li Y
  Frontiers in genetics (2019) 10:805 PMC6752658 10.3389/fgene.2019.00805
• Comparative metatranscriptomic profiling and microRNA sequencing to reveal active metabolic pathways associated with a dinoflagellate bloom.
  Yu L, Zhang Y, Li M, Wang C, Lin X, Li L, Shi X, Guo C, Lin S
  The Science of the total environment (2019) 699:134323 10.1016/j.scitotenv.2019.134323
• Non-Conventional Metal Ion Cofactor Requirement of Dinoflagellate Alkaline Phosphatase and Translational Regulation by Phosphorus Limitation.
  Lin X, Guo C, Li L, Li T, Lin S
  Microorganisms (2019) 7(8): PMC6723241 10.3390/microorganisms7080232
• Flourishing deep-sea AAP bacteria detected by flow cytometric sorting and molecular analysis.
  Qiu D, Huang L, Liu X, Lin S
  PLoS ONE (2019) 14(6):e0218753 10.1371/journal.pone.0218753
• Altered Immune Landscape and Disrupted Coral- Symbiosis in the Scleractinian Coral by Challenge.
  Zhou Z, Zhao S, Tang J, Liu Z, Wu Y, Wang Y, Lin S
  Front Physiol (2019) 10:366 (PMC6454040) 10.3389/fphys.2019.00366
• Transcriptomic Responses to Thermal Stress and Varied Phosphorus Conditions in .
  Lin S, Yu L, Zhang H
  Microorganisms (2019) 7(4): (PMC6517890) 10.3390/microorganisms7040096
• Metatranscriptomic Signatures Associated With Phytoplankton Regime Shift From Diatom Dominance to a Dinoflagellate Bloom.
  Zhang Y, Lin X, Shi X, Lin L, Luo H, Li L, Lin S
  Front Microbiol (2019) 10:590 (PMC6439486) 10.3389/fmicb.2019.00590
• Initial evidence of functional siRNA machinery in dinoflagellates.
  Zhang C, Lin S
  Harmful Algae (2019) 81:53-58 10.1016/j.hal.2018.11.014

• 2018

• Isolation of an algicidal bacterium and its effects against the harmful-algal- bloom dinoflagellate Prorocentrum donghaiense (Dinophyceae).
  Shi X, Liu L, Li Y, Xiao Y, Ding G, Lin S, Chen J
  Harmful Algae (2018) 80:72-79 10.1016/j.hal.2018.09.003
• Genome size-dependent pcna gene copy number in dinoflagellates and molecular evidence of retroposition as a major evolutionary mechanism.
  Hou Y, Ji N, Zhang H, Shi X, Han H, Lin S
  J. Phycol. (2018) 55(1):37-46 10.1111/jpy.12815
• Identification and Expression Analysis of an Atypical Alkaline Phosphatase in .
  Li T, Guo C, Zhang Y, Wang C, Lin X, Lin S
  Front Microbiol (2018) 9:2156 (PMC6156274) 10.3389/fmicb.2018.02156
• Acute microplastic exposure raises stress response and suppresses detoxification and immune capacities in the scleractinian coral Pocillopora damicornis.
  Tang J, Ni X, Zhou Z, Wang L, Lin S
  Environ. Pollut. (2018) 243(Pt A):66-74 10.1016/j.envpol.2018.08.045
• Morphology and molecular phylogeny of epizoic araphid diatoms on marine zooplankton, including Pseudofalcula hyalina gen. & comb. nov. (Fragilariophyceae, Bacillariophyta).
  Gómez F, Wang L, Lin S
  J. Phycol. (2018) 54(4):557-570 10.1111/jpy.12760
• Biogeographic patterns of abundant and rare bacterioplankton in three subtropical bays resulting from selective and neutral processes.
  Mo Y, Zhang W, Yang J, Lin Y, Yu Z, Lin S
  ISME J (2018) 12(9):2198-2210 (PMC6092436) 10.1038/s41396-018-0153-6
• Circadian and irradiance effects on expression of antenna protein genes and pigment contents in dinoflagellate Prorocentrum donghaiense (Dinophycae).
  Shi X, Li L, Lin S
  Harmful Algae (2018) 75:27-34 10.1016/j.hal.2018.04.002
• Author Correction: Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
  de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R
  Nat Commun (2018) 9(1):1811 (PMC5931568) 10.1038/s41467-018-04260-2
• Morphology and Molecular Phylogeny of Peritrich Ciliate Epibionts on Pelagic Diatoms: Vorticella oceanica and Pseudovorticella coscinodisci sp. nov. (Ciliophora, Peritrichia).
  Gómez F, Wang L, Lin S
  Protist (2018) 169(2):268-279 10.1016/j.protis.2018.03.003
• Recurrent acquisition of cytosine methyltransferases into eukaryotic retrotransposons.
  de Mendoza A, Bonnet A, Vargas-Landin DB, Ji N, Li H, Yang F, Li L, Hori K, Pflueger J, Buckberry S, Ohta H, Rosic N, Lesage P, Lin S, Lister R
  Nat Commun (2018) 9(1):1341 (PMC5890265) 10.1038/s41467-018-03724-9
• Metatranscriptome analysis reveals environmental and diel regulation of a Heterosigma akashiwo (raphidophyceae) bloom.
  Ji N, Lin L, Li L, Yu L, Zhang Y, Luo H, Li M, Shi X, Wang DZ, Lin S
  Environ. Microbiol. (2018) 20(3):1078-1094 10.1111/1462-2920.14045
• Glyphosate Shapes a Dinoflagellate-Associated Bacterial Community While Supporting Algal Growth as Sole Phosphorus Source.
  Wang C, Lin X, Li L, Lin L, Lin S
  Front Microbiol (2018) 8:2530 (PMC5742145) 10.3389/fmicb.2017.02530

• 2017

• Utilization of urea and expression profiles of related genes in the dinoflagellate Prorocentrum donghaiense.
  Jing X, Lin S, Zhang H, Koerting C, Yu Z
  PLoS ONE (2017) 12(11):e0187837 (PMC5678928) 10.1371/journal.pone.0187837
• Comparative Genomics Reveals Two Major Bouts of Gene Retroposition Coinciding with Crucial Periods of Symbiodinium Evolution.
  Song B, Morse D, Song Y, Fu Y, Lin X, Wang W, Cheng S, Chen W, Liu X, Lin S
  Genome Biol Evol (2017) 9(8):2037-2047 (PMC5585692) 10.1093/gbe/evx144
• The diversity and biogeography of abundant and rare intertidal marine microeukaryotes explained by environment and dispersal limitation.
  Zhang W, Pan Y, Yang J, Chen H, Holohan B, Vaudrey J, Lin S, McManus GB
  Environ. Microbiol. (2017) 20(2):462-476 10.1111/1462-2920.13916
• Transcriptomic and physiological analyses of the dinoflagellate Karenia mikimotoi reveal non-alkaline phosphatase-based molecular machinery of ATP utilisation.
  Luo H, Lin X, Li L, Lin L, Zhang C, Lin S
  Environ. Microbiol. (2017) 19(11):4506-4518 10.1111/1462-2920.13899
• Molecular mechanism of glucose-6-phosphate utilization in the dinoflagellate Karenia mikimotoi.
  Zhang C, Luo H, Huang L, Lin S
  Harmful Algae (2017) 67:74-84 10.1016/j.hal.2017.06.006
• Insights into the red algae and eukaryotic evolution from the genome of (Bangiophyceae, Rhodophyta).
  Brawley SH, Blouin NA, Ficko-Blean E, Wheeler GL, Lohr M, Goodson HV, Jenkins JW, Blaby-Haas CE, Helliwell KE, Chan CX, Marriage TN, Bhattacharya D, Klein AS, Badis Y, Brodie J, Cao Y, Collén J, Dittami SM, Gachon CMM, Green BR, Karpowicz SJ, Kim JW, Kudahl UJ, Lin S, Michel G, Mittag M, Olson BJSC, Pangilinan JL, Peng Y, Qiu H, Shu S, Singer JT, Smith AG, Sprecher BN, Wagner V, Wang W, Wang ZY, Yan J, Yarish C, Zäuner-Riek S, Zhuang Y, Zou Y, Lindquist EA, Grimwood J, Barry KW, Rokhsar DS, Schmutz J, Stiller JW, Grossman AR, Prochnik SE
  Proc. Natl. Acad. Sci. U.S.A. (2017) 114(31):E6361-E6370 (PMC5547612) 10.1073/pnas.1703088114
• Cell Cycle-Dependent Expression Dynamics of G1/S Specific Cyclin, Cellulose Synthase and Cellulase in the Dinoflagellate .
  Shi X, Ma M, Lin S
  Front Microbiol (2017) 8:1118 (PMC5476699) 10.3389/fmicb.2017.01118
• Transcriptomic and microRNAomic profiling reveals multi-faceted mechanisms to cope with phosphate stress in a dinoflagellate.
  Shi X, Lin X, Li L, Li M, Palenik B, Lin S
  ISME J (2017) 11(10):2209-2218 (PMC5607363) 10.1038/ismej.2017.81
• Enhancement of Non-photochemical Quenching as an Adaptive Strategy under Phosphorus Deprivation in the Dinoflagellate .
  Cui Y, Zhang H, Lin S
  Front Microbiol (2017) 8:404 (PMC5350143) 10.3389/fmicb.2017.00404
• The Synonymy of the Toxic Dinoflagellates Prorocentrum mexicanum and P. rhathymum and the Description of P. steidingerae sp. nov. (Prorocentrales, Dinophyceae).
  Gómez F, Qiu D, Lin S
  J. Eukaryot. Microbiol. (2017) 64(5):668-677 10.1111/jeu.12403
• Reply to Johnson et al.: Functionally active cryptophyte cell membrane and cytoplasm indicate intact symbionts within .
  Qiu D, Lin L, Lin S
  Proc. Natl. Acad. Sci. U.S.A. (2017) 114(7):E1043-E1044 (PMC5321010) 10.1073/pnas.1620409114
• The Genetic Diversity of and Associated Cryptophytes.
  Johnson MD, Beaudoin DJ, Laza-Martinez A, Dyhrman ST, Fensin E, Lin S, Merculief A, Nagai S, Pompeu M, Setälä O, Stoecker DK
  Front Microbiol (2017) 7:2017 (PMC5168500) 10.3389/fmicb.2016.02017

• 2016

• Cryptophyte farming by symbiotic ciliate host detected in situ.
  Qiu D, Huang L, Lin S
  Proc. Natl. Acad. Sci. U.S.A. (2016) 113(43):12208-12213 (PMC5087057) 10.1073/pnas.1612483113
• Phosphorus Deficiency Inhibits Cell Division But Not Growth in the Dinoflagellate Amphidinium carterae.
  Li M, Shi X, Guo C, Lin S
  Front Microbiol (2016) 7:826 (PMC4887478) 10.3389/fmicb.2016.00826
• Morphological and molecular characterization of Ptychodiscus noctiluca revealed the polyphyletic nature of the order Ptychodiscales (Dinophyceae).
  Gómez F, Qiu D, Dodge JD, Lopes RM, Lin S
  J. Phycol. (2016) 52(5):793-805 10.1111/jpy.12438
• Phylogenetic Analyses of Three Genes of Pedinomonas noctilucae, the Green Endosymbiont of the Marine Dinoflagellate Noctiluca scintillans, Reveal its Affiliation to the Order Marsupiomonadales (Chlorophyta, Pedinophyceae) under the Reinstated Name Protoeuglena noctilucae.
  Wang L, Lin X, Goes JI, Lin S
  Protist (2016) 167(2):205-16 10.1016/j.protis.2016.02.005
• Phosphorus physiological ecology and molecular mechanisms in marine phytoplankton.
  Lin S, Litaker RW, Sunda WG
  J. Phycol. (2016) 52(1):10-36 10.1111/jpy.12365
• Differential Growth Responses of Marine Phytoplankton to Herbicide Glyphosate.
  Wang C, Lin X, Li L, Lin S
  PLoS ONE (2016) 11(3):e0151633 (PMC4795549) 10.1371/journal.pone.0151633
• Effects of Trace Metal Concentrations on the Growth of the Coral Endosymbiont Symbiodinium kawagutii.
  Rodriguez IB, Lin S, Ho J, Ho TY
  Front Microbiol (2016) 7:82 (PMC4744903) 10.3389/fmicb.2016.00082

• 2015

• Space station image captures a red tide ciliate bloom at high spectral and spatial resolution.
  Dierssen H, McManus GB, Chlus A, Qiu D, Gao BC, Lin S
  Proc. Natl. Acad. Sci. U.S.A. (2015) 112(48):14783-7 (PMC4672822) 10.1073/pnas.1512538112
• Spliced leader RNA trans-splicing discovered in copepods.
  Yang F, Xu D, Zhuang Y, Yi X, Huang Y, Chen H, Lin S, Campbell DA, Sturm NR, Liu G, Zhang H
  Sci Rep (2015) 5:17411 (PMC4664967) 10.1038/srep17411
• The Symbiodinium kawagutii genome illuminates dinoflagellate gene expression and coral symbiosis.
  Lin S, Cheng S, Song B, Zhong X, Lin X, Li W, Li L, Zhang Y, Zhang H, Ji Z, Cai M, Zhuang Y, Shi X, Lin L, Wang L, Wang Z, Liu X, Yu S, Zeng P, Hao H, Zou Q, Chen C, Li Y, Wang Y, Xu C, Meng S, Xu X, Wang J, Yang H, Campbell DA, Sturm NR, Dagenais-Bellefeuille S, Morse D
  Science (2015) 350(6261):691-4 10.1126/science.aad0408
• Rapidly diverging evolution of an atypical alkaline phosphatase (PhoA(aty)) in marine phytoplankton: insights from dinoflagellate alkaline phosphatases.
  Lin X, Wang L, Shi X, Lin S
  Front Microbiol (2015) 6:868 (PMC4548154) 10.3389/fmicb.2015.00868
• An Improved DNA Extraction Method for Efficient and Quantitative Recovery of Phytoplankton Diversity in Natural Assemblages.
  Yuan J, Li M, Lin S
  PLoS ONE (2015) 10(7):e0133060 (PMC4517865) 10.1371/journal.pone.0133060
• Screening for Suitable Reference Genes for Quantitative Real-Time PCR in Heterosigma akashiwo (Raphidophyceae).
  Ji N, Li L, Lin L, Lin S
  PLoS ONE (2015) 10(7):e0132183 (PMC4489630) 10.1371/journal.pone.0132183
• Rhodopsin gene expression regulated by the light dark cycle, light spectrum and light intensity in the dinoflagellate Prorocentrum.
  Shi X, Li L, Guo C, Lin X, Li M, Lin S
  Front Microbiol (2015) 6:555 (PMC4451421) 10.3389/fmicb.2015.00555
• Fukuyoa paulensis gen. et sp. nov., a new genus for the globular species of the dinoflagellate Gambierdiscus (Dinophyceae).
  Gómez F, Qiu D, Lopes RM, Lin S
  PLoS ONE (2015) 10(4):e0119676 (PMC4382304) 10.1371/journal.pone.0119676

• 2014

• Light-promoted rhodopsin expression and starvation survival in the marine dinoflagellate Oxyrrhis marina.
  Guo Z, Zhang H, Lin S
  PLoS ONE (2014) 9(12):e114941 (PMC4266641) 10.1371/journal.pone.0114941
• Detecting in situ copepod diet diversity using molecular technique: development of a copepod/symbiotic ciliate-excluding eukaryote-inclusive PCR protocol.
  Hu S, Guo Z, Li T, Carpenter EJ, Liu S, Lin S
  PLoS ONE (2014) 9(7):e103528 (PMC4110036) 10.1371/journal.pone.0103528
• The Marine Microbial Eukaryote Transcriptome Sequencing Project (MMETSP): illuminating the functional diversity of eukaryotic life in the oceans through transcriptome sequencing.
  Keeling PJ, Burki F, Wilcox HM, Allam B, Allen EE, Amaral-Zettler LA, Armbrust EV, Archibald JM, Bharti AK, Bell CJ, Beszteri B, Bidle KD, Cameron CT, Campbell L, Caron DA, Cattolico RA, Collier JL, Coyne K, Davy SK, Deschamps P, Dyhrman ST, Edvardsen B, Gates RD, Gobler CJ, Greenwood SJ, Guida SM, Jacobi JL, Jakobsen KS, James ER, Jenkins B, John U, Johnson MD, Juhl AR, Kamp A, Katz LA, Kiene R, Kudryavtsev A, Leander BS, Lin S, Lovejoy C, Lynn D, Marchetti A, McManus G, Nedelcu AM, Menden-Deuer S, Miceli C, Mock T, Montresor M, Moran MA, Murray S, Nadathur G, Nagai S, Ngam PB, Palenik B, Pawlowski J, Petroni G, Piganeau G, Posewitz MC, Rengefors K, Romano G, Rumpho ME, Rynearson T, Schilling KB, Schroeder DC, Simpson AG, Slamovits CH, Smith DR, Smith GJ, Smith SR, Sosik HM, Stief P, Theriot E, Twary SN, Umale PE, Vaulot D, Wawrik B, Wheeler GL, Wilson WH, Xu Y, Zingone A, Worden AZ
  PLoS Biol. (2014) 12(6):e1001889 (PMC4068987) 10.1371/journal.pbio.1001889
• Massive gene transfer and extensive RNA editing of a symbiotic dinoflagellate plastid genome.
  Mungpakdee S, Shinzato C, Takeuchi T, Kawashima T, Koyanagi R, Hisata K, Tanaka M, Goto H, Fujie M, Lin S, Satoh N, Shoguchi E
  Genome Biol Evol (2014) 6(6):1408-22 (PMC4079212) 10.1093/gbe/evu109
• DNA barcoding species in Alexandrium tamarense complex using ITS and proposing designation of five species.
  Wang L, Zhuang Y, Zhang H, Lin X, Lin S
  Harmful Algae (2014) 31:100-113 10.1016/j.hal.2013.10.013

• 2013

• Biology of the Marine Heterotrophic Dinoflagellate : Current Status and Future Directions.
  Guo Z, Zhang H, Liu S, Lin S
  Microorganisms (2013) 1(1):33-57 (PMC5029500) 10.3390/microorganisms1010033
• Signal recognition particle RNA in dinoflagellates and the Perkinsid Perkinsus marinus.
  Zhang H, Campbell DA, Sturm NR, Rosenblad MA, Dungan CF, Lin S
  Protist (2013) 164(5):748-61 10.1016/j.protis.2013.07.004
• Proof that dinoflagellate spliced leader (DinoSL) is a useful hook for fishing dinoflagellate transcripts from mixed microbial samples: Symbiodinium kawagutii as a case study.
  Zhang H, Zhuang Y, Gill J, Lin S
  Protist (2013) 164(4):510-27 10.1016/j.protis.2013.04.002
• Polyadenylation of 18S rRNA in algae(1).
  Zhuang Y, Zhang H, Lin S
  J. Phycol. (2013) 49(3):570-9 10.1111/jpy.12068
• Transcriptomic study reveals widespread spliced leader trans-splicing, short 5'-UTRs and potential complex carbon fixation mechanisms in the euglenoid Alga Eutreptiella sp.
  Kuo RC, Zhang H, Zhuang Y, Hannick L, Lin S
  PLoS ONE (2013) 8(4):e60826 (PMC3621762) 10.1371/journal.pone.0060826

• 2012

• Porphyra (Bangiophyceae) Transcriptomes Provide Insights Into Red Algal Development And Metabolism.
  Chan CX, Blouin NA, Zhuang Y, Zäuner S, Prochnik SE, Lindquist E, Lin S, Benning C, Lohr M, Yarish C, Gantt E, Grossman AR, Lu S, Müller K, W Stiller J, Brawley SH, Bhattacharya D
  J. Phycol. (2012) 48(6):1328-42 10.1111/j.1529-8817.2012.01229.x
• Ectobiotic and endobiotic bacteria associated with Eutreptiella sp. isolated from Long Island Sound.
  Kuo RC, Lin S
  Protist (2012) 164(1):60-74 10.1016/j.protis.2012.08.004
• Effect of inorganic and organic ligands on the bioavailability of methylmercury as determined by using a mer-lux bioreporter.
  Ndu U, Mason RP, Zhang H, Lin S, Visscher PT
  Appl. Environ. Microbiol. (2012) 78(20):7276-82 (PMC3457092) 10.1128/AEM.00362-12
• MAJOR DEVELOPMENTAL REGULATORS AND THEIR EXPRESSION IN TWO CLOSELY RELATED SPECIES OF PORPHYRA (RHODOPHYTA)(1).
  Stiller JW, Perry J, Rymarquis LA, Accerbi M, Green PJ, Prochnik S, Lindquist E, Chan CX, Yarish C, Lin S, Zhuang Y, Blouin NA, Brawley SH
  J. Phycol. (2012) 48(4):883-96 10.1111/j.1529-8817.2012.01138.x

• 2011

• Alkaline Phosphatase Gene Sequence And Transcriptional Regulation By Phosphate Limitation In Amphidinium Carterae (Dinophyceae)(1).
  Lin X, Zhang H, Huang B, Lin S
  J. Phycol. (2011) 47(5):1110-20 10.1111/j.1529-8817.2011.01038.x
• Spliced leader RNAs, mitochondrial gene frameshifts and multi-protein phylogeny expand support for the genus Perkinsus as a unique group of alveolates.
  Zhang H, Campbell DA, Sturm NR, Dungan CF, Lin S
  PLoS ONE (2011) 6(5):e19933 (PMC3101222) 10.1371/journal.pone.0019933
• Genomic understanding of dinoflagellates.
  Lin S
  Res. Microbiol. (2011) 162(6):551-69 10.1016/j.resmic.2011.04.006

• 2010

• Spliced leader-based metatranscriptomic analyses lead to recognition of hidden genomic features in dinoflagellates.
  Lin S, Zhang H, Zhuang Y, Tran B, Gill J
  Proc. Natl. Acad. Sci. U.S.A. (2010) 107(46):20033-8 (PMC2993343) 10.1073/pnas.1007246107
• Introns, alternative splicing, spliced leader trans-splicing and differential expression of pcna and cyclin in Perkinsus marinus.
  Zhang H, Dungan CF, Lin S
  Protist (2010) 162(1):154-67 10.1016/j.protis.2010.03.003
• Serious overestimation in quantitative PCR by circular (supercoiled) plasmid standard: microalgal pcna as the model gene.
  Hou Y, Zhang H, Miranda L, Lin S
  PLoS ONE (2010) 5(3):e9545 (PMC2832698) 10.1371/journal.pone.0009545

• 2009

• Distinct gene number-genome size relationships for eukaryotes and non-eukaryotes: gene content estimation for dinoflagellate genomes.
  Hou Y, Lin S
  PLoS ONE (2009) 4(9):e6978 (PMC2737104) 10.1371/journal.pone.0006978
• Dinoflagellate spliced leader RNA genes display a variety of sequences and genomic arrangements.
  Zhang H, Campbell DA, Sturm NR, Lin S
  Mol. Biol. Evol. (2009) 26(8):1757-71 (PMC2734150) 10.1093/molbev/msp083
• Retrieval of missing spliced leader in dinoflagellates.
  Zhang H, Lin S
  PLoS ONE (2009) 4(1):e4129 (PMC2606063) 10.1371/journal.pone.0004129

• 2008

• High-level diversity of dinoflagellates in the natural environment, revealed by assessment of mitochondrial cox1 and cob genes for dinoflagellate DNA barcoding.
  Lin S, Zhang H, Hou Y, Zhuang Y, Miranda L
  Appl. Environ. Microbiol. (2008) 75(5):1279-90 (PMC2648164) 10.1128/AEM.01578-08
• mRNA EDITING AND SPLICED-LEADER RNA TRANS-SPLICING GROUPS OXYRRHIS, NOCTILUCA, HETEROCAPSA, AND AMPHIDINIUM AS BASAL LINEAGES OF DINOFLAGELLATES(1).
  Zhang H, Lin S
  J. Phycol. (2008) 44(3):703-11 10.1111/j.1529-8817.2008.00521.x
• Mitochondrial cob and cox1 genes and editing of the corresponding mRNAs in Dinophysis acuminata from Narragansett Bay, with special reference to the phylogenetic position of the genus Dinophysis.
  Zhang H, Bhattacharya D, Maranda L, Lin S
  Appl. Environ. Microbiol. (2008) 74(5):1546-54 (PMC2258633) 10.1128/AEM.02103-07

• 2007

• A three-gene dinoflagellate phylogeny suggests monophyly of prorocentrales and a basal position for amphidinium and heterocapsa.
  Zhang H, Bhattacharya D, Lin S
  J. Mol. Evol. (2007) 65(4):463-74 10.1007/s00239-007-9038-4
• Spliced leader RNA trans-splicing in dinoflagellates.
  Zhang H, Hou Y, Miranda L, Campbell DA, Sturm NR, Gaasterland T, Lin S
  Proc. Natl. Acad. Sci. U.S.A. (2007) 104(11):4618-23 (PMC1838650) 10.1073/pnas.0700258104

• 2006

• Development of a dinoflagellate-oriented PCR primer set leads to detection of picoplanktonic dinoflagellates from Long Island Sound.
  Lin S, Zhang H, Hou Y, Miranda L, Bhattacharya D
  Appl. Environ. Microbiol. (2006) 72(8):5626-30 (PMC1538694) 10.1128/AEM.00586-06
• Isolation and characterization of proliferating cell nuclear antigen from the dinoflagellate Pfiesteria piscicida.
  Zhang H, Hou Y, Lin S
  J. Eukaryot. Microbiol. (2006) 53(2):142-50 10.1111/j.1550-7408.2005.00085.x

• 2005

• Mitochondrial cytochrome b mRNA editing in dinoflagellates: possible ecological and evolutionary associations?
  Zhang H, Lin S
  J. Eukaryot. Microbiol. (2005) 52(6):538-45 10.1111/j.1550-7408.2005.00060.x
• Development of a cob-18S rRNA gene real-time PCR assay for quantifying Pfiesteria shumwayae in the natural environment.
  Zhang H, Lin S
  Appl. Environ. Microbiol. (2005) 71(11):7053-63 (PMC1287735) 10.1128/AEM.71.11.7053-7063.2005

• 2004

• Molecular cloning and antiserum development of cyclin box in the brown tide alga Aureococcus anophagefferens.
  Lin S, Magaletti E, Carpenter EJ
  Mar. Biotechnol. (2004) 2(6):577-86 10.1007/s101260000044

• 2003

• Mitogen-activated protein kinase in Pfiesteria piscicida and its growth rate-related expression.
  Lin S, Zhang H
  Appl. Environ. Microbiol. (2003) 69(1):343-9 (PMC152464) 10.1128/aem.69.1.343-349.2003

• 2002

• Widespread and extensive editing of mitochondrial mRNAS in dinoflagellates.
  Lin S, Zhang H, Spencer DF, Norman JE, Gray MW
  J. Mol. Biol. (2002) 320(4):727-39
• Detection and quantification of Pfiesteria piscicida by using the mitochondrial cytochrome b gene.
  Zhang H, Lin S
  Appl. Environ. Microbiol. (2002) 68(2):989-94 (PMC126730) 10.1128/aem.68.2.989-994.2002

• 1999

• Substrate specificity and stereoselectivity of rat brain microsomal anandamide amidohydrolase.
  Lang W, Qin C, Lin S, Khanolkar AD, Goutopoulos A, Fan P, Abouzid K, Meng Z, Biegel D, Makriyannis A
  J. Med. Chem. (1999) 42(5):896-902 10.1021/jm980461j
• Structure-activity relationships of pyrazole derivatives as cannabinoid receptor antagonists.
  Lan R, Liu Q, Fan P, Lin S, Fernando SR, McCallion D, Pertwee R, Makriyannis A
  J. Med. Chem. (1999) 42(4):769-76 10.1021/jm980363y

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