Publications: Ranjan Srivastava

• 2022

• Aspergillus nidulans Septa Are Indispensable for Surviving Cell Wall Stress.
  Spence RN, Huso W, Edwards H, Doan A, Reese S, Harris SD, Srivastava R, Marten MR
  Microbiology spectrum (2022) 10(1):e0206321 PMC4643482 10.1016/j.fgb.2019.01.003

• 2021

• In Silico Evolution of High-Performing Metal Organic Frameworks for Methane Adsorption.
  Beauregard N, Pardakhti M, Srivastava R
  Journal of chemical information and modeling (2021) 61(7):3232-3239 10.1021/acs.jcim.0c01479

• 2020

• Enhancing iCVD Modification of Electrospun Membranes for Membrane Distillation Using a 3D Printed Scaffold.
  Beauregard N, Al-Furaiji M, Dias G, Worthington M, Suresh A, Srivastava R, Burkey DD, McCutcheon JR
  Polymers (2020) 12(9): PMC7570062 10.3390/polym12092074
• Dynamic Transcriptomic and Phosphoproteomic Analysis During Cell Wall Stress in .
  Chelius C, Huso W, Reese S, Doan A, Lincoln S, Lawson K, Tran B, Purohit R, Glaros T, Srivastava R, Harris SD, Marten MR
  Molecular & cellular proteomics : MCP (2020) 19(8):1310-1329 PMC8014999 10.1074/mcp.RA119.001769

• 2019

• Trends in Solid Adsorbent Materials Development for CO Capture.
  Pardakhti M, Jafari T, Tobin Z, Dutta B, Moharreri E, Shemshaki NS, Suib S, Srivastava R
  ACS applied materials & interfaces (2019) 11(38):34533-34559 10.1021/acsami.9b08487
• Energy-Geometry Dependency of Molecular Structures: A Multistep Machine Learning Approach.
  Moharreri E, Pardakhti M, Srivastava R, Suib SL
  ACS combinatorial science (2019) 21(9):614-621 10.1021/acscombsci.9b00028
• Classification of Tea Aromas Using Multi-Nanoparticle Based Chemiresistor Arrays.
  Gao T, Wang Y, Zhang C, Pittman ZA, Oliveira AM, Fu K, Zhao J, Srivastava R, Willis BG
  Sensors (Basel, Switzerland) (2019) 19(11): PMC6603602 10.3390/s19112547
• Comprehensive Analysis of Aspergillus nidulans PKA Phosphorylome Identifies a Novel Mode of CreA Regulation.
  Ribeiro LFC, Chelius C, Boppidi KR, Naik NS, Hossain S, Ramsey JJJ, Kumar J, Ribeiro LF, Ostermeier M, Tran B, Ah Goo Y, de Assis LJ, Ulas M, Bayram O, Goldman GH, Lincoln S, Srivastava R, Harris SD, Marten MR
  mBio (2019) 10(2): PMC6495382 10.1128/mBio.02825-18
• Phosphoproteomic and transcriptomic analyses reveal multiple functions for Aspergillus nidulans MpkA independent of cell wall stress.
  Chelius CL, Ribeiro LFC, Huso W, Kumar J, Lincoln S, Tran B, Goo YA, Srivastava R, Harris SD, Marten MR
  Fungal genetics and biology : FG & B (2019) 125:1-12 10.1016/j.fgb.2019.01.003

• 2018

• Altered secretion patterns and cell wall organization caused by loss of PodB function in the filamentous fungus Aspergillus nidulans.
  Boppidi KR, Ribeiro LFC, Iambamrung S, Nelson SM, Wang Y, Momany M, Richardson EA, Lincoln S, Srivastava R, Harris SD, Marten MR
  Sci Rep (2018) 8(1):11433 (PMC6065416) 10.1038/s41598-018-29615-z
• Low-abundant bacteria drive compositional changes in the gut microbiota after dietary alteration.
  Benjamino J, Lincoln S, Srivastava R, Graf J
  Microbiome (2018) 6(1):86 (PMC5944116) 10.1186/s40168-018-0469-5

• 2017

• Machine Learning Using Combined Structural and Chemical Descriptors for Prediction of Methane Adsorption Performance of Metal Organic Frameworks (MOFs).
  Pardakhti M, Moharreri E, Wanik D, Suib SL, Srivastava R
  ACS Comb Sci (2017) 19(10):640-645

• 2014

• Batch, design optimization, and DNA sequencing study for continuous 1,3-propanediol production from waste glycerol by a soil-based inoculum.
  Kanjilal B, Noshadi I, Bautista EJ, Srivastava R, Parnas RS
  Appl. Microbiol. Biotechnol. (2014) 99(5):2105-17

• 2013

• Semi-automated curation of metabolic models via flux balance analysis: a case study with Mycoplasma gallisepticum.
  Bautista EJ, Zinski J, Szczepanek SM, Johnson EL, Tulman ER, Ching WM, Geary SJ, Srivastava R
  PLoS Comput. Biol. (2013) 9(9):e1003208 (PMC3764002)

• 2012

• Volatility in mRNA secondary structure as a design principle for antisense.
  Johnson E, Srivastava R
  Nucleic Acids Res. (2012) 41(3):e43 (PMC3562002)

• 2011

• Study of in situ 1-butanol pervaporation from A-B-E fermentation using a PDMS composite membrane: validity of solution-diffusion model for pervaporative A-B-E fermentation.
  Li SY, Srivastava R, Parnas RS
  Biotechnol. Prog. (2011) 27(1):111-20
• Performance of batch, fed-batch, and continuous A-B-E fermentation with pH-control.
  Li SY, Srivastava R, Suib SL, Li Y, Parnas RS
  Bioresour. Technol. (2011) 102(5):4241-50

• 2010

• Metabolic investigation of host/pathogen interaction using MS2-infected Escherichia coli.
  Jain R, Srivastava R
  BMC Syst Biol (2010) 3:121 (PMC2813233)

• 2007

• Emerging technologies: systems biology.
  Srivastava R, Varner J
  Biotechnol. Prog. (2007) 23(1):24-7

• 2006

• Bayesian-based selection of metabolic objective functions.
  Knorr AL, Jain R, Srivastava R
  Bioinformatics (2006) 23(3):351-7
• Investigation of bacteriophage MS2 viral dynamics using model discrimination analysis and the implications for phage therapy.
  Jain R, Knorr AL, Bernacki J, Srivastava R
  Biotechnol. Prog. (2006) 22(6):1650-8
• Systematic tuning of parameters in support vector clustering.
  Yilmaz O, Achenie LE, Srivastava R
  Math Biosci (2006) 205(2):252-70

• 2004

• Evaluation of HIV-1 kinetic models using quantitative discrimination analysis.
  Knorr AL, Srivastava R
  Bioinformatics (2004) 21(8):1668-77