Publications: Louise Lewis
2023
- Chloroplast genome evolution and phylogeny of the early-diverging charophycean green algae with a focus on the Klebsormidiophyceae and Streptofilum.
Glass SE, McCourt RM, Gottschalk SD, Lewis LA, Karol KG
Journal of phycology (2023) 59(6):1133-1146 10.1111/jpy.13359 - Green land: Multiple perspectives on green algal evolution and the earliest land plants.
McCourt RM, Lewis LA, Strother PK, Delwiche CF, Wickett NJ, de Vries J, Bowman JL
American journal of botany (2023) 110(5):e16175 10.1002/ajb2.16175 2022
- Dynamic plastid and mitochondrial genomes in Chaetopeltidales (Chlorophyceae) and characterization of a new chlorophyte taxon.
Robison T, Nelson JM, Hauser DA, Lewis LA, Li FW
American journal of botany (2022) 109(6):939-951 10.1002/ajb2.16015 2021
- Large Phylogenomic Data sets Reveal Deep Relationships and Trait Evolution in Chlorophyte Green Algae.
Li X, Hou Z, Xu C, Shi X, Yang L, Lewis LA, Zhong B
Genome biology and evolution (2021) 13(7): PMC8271138 10.1093/gbe/evab101 - Climate and seasonality drive the richness and composition of tropical fungal endophytes at a landscape scale.
Oita S, Ibáñez A, Lutzoni F, Miadlikowska J, Geml J, Lewis LA, Hom EFY, Carbone I, U'Ren JM, Arnold AE
Communications biology (2021) 4(1):313 PMC7943826 10.1038/s42003-021-01826-7 - Terrestrial Green Algae Show Higher Tolerance to Dehydration than Do Their Aquatic Sister-Species.
Terlova EF, Holzinger A, Lewis LA
Microbial ecology (2021) 82(3):770-782 PMC7612456 10.1007/s00248-020-01679-3 2019
- Order, please! Uncertainty in the ordinal-level classification of Chlorophyceae.
Fučíková K, Lewis PO, Neupane S, Karol KG, Lewis LA
PeerJ (2019) 7:e6899 PMC6525593 10.7717/peerj.6899 - Assessing Combinability of Phylogenomic Data Using Bayes Factors.
Neupane S, Fučíková K, Lewis LA, Kuo L, Chen MH, Lewis PO
Systematic biology (2019) 68(5):744-754 10.1093/sysbio/syz007 2018
- Contemporaneous radiations of fungi and plants linked to symbiosis.
Lutzoni F, Nowak MD, Alfaro ME, Reeb V, Miadlikowska J, Krug M, Arnold AE, Lewis LA, Swofford DL, Hibbett D, Hilu K, James TY, Quandt D, Magallón S
Nat Commun (2018) 9(1):5451 (PMC6303338) 10.1038/s41467-018-07849-9 - Organellar phylogenomics inform systematics in the green algal family Hydrodictyaceae (Chlorophyceae) and provide clues to the complex evolutionary history of plastid genomes in the green algal tree of life.
McManus HA, Fučíková K, Lewis PO, Lewis LA, Karol KG
Am. J. Bot. (2018) 105(3):315-329 10.1002/ajb2.1066 2017
- Hold the salt: Freshwater origin of primary plastids.
Lewis LA
Proc. Natl. Acad. Sci. U.S.A. (2017) 114(37):9759-9760 (PMC5604047) - The terrestrial green macroalga Prasiola calophylla (Trebouxiophyceae, Chlorophyta): ecophysiological performance under water-limiting conditions.
Holzinger A, Herburger K, Blaas K, Lewis LA, Karsten U
Protoplasma (2017) 254(4):1755-1767 (PMC5474099) 2016
- Hiding in plain sight: Koshicola spirodelophila gen. et sp. nov. (Chaetopeltidales, Chlorophyceae), a novel green alga associated with the aquatic angiosperm Spirodela polyrhiza.
Watanabe S, Fučíková K, Lewis LA, Lewis PO
Am. J. Bot. (2016) 103(5):865-75 - Estimating Bayesian Phylogenetic Information Content.
Lewis PO, Chen MH, Kuo L, Lewis LA, Fučíková K, Neupane S, Wang YB, Shi D
Syst. Biol. (2016) 65(6):1009-1023 (PMC5066063) - Comparative analyses of chloroplast genome data representing nine green algae in Sphaeropleales (Chlorophyceae, Chlorophyta).
Fučíková K, Lewis LA, Lewis PO
Data Brief (2016) 7:558-70 (PMC4802548) - Chodatodesmus australis sp. nov. (Scenedesmaceae, Chlorophyta) from Antarctica, with the emended description of the genus Chodatodesmus, and circumscription of Flechtneria rotunda gen. et sp. nov.
Sciuto K, Lewis LA, Verleyen E, Moro I, La Rocca N
J. Phycol. (2016) 51(6):1172-88 - Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution.
Fučíková K, Lewis PO, Lewis LA
Mol. Phylogenet. Evol. (2016) 98:176-83 2014
- Gene arrangement convergence, diverse intron content, and genetic code modifications in mitochondrial genomes of sphaeropleales (chlorophyta).
Fučíková K, Lewis PO, González-Halphen D, Lewis LA
Genome Biol Evol (2014) 6(8):2170-80 (PMC4159012) - Lacustrine Nostoc (Nostocales) and associated microbiome generate a new type of modern clotted microbialite.
Graham LE, Knack JJ, Piotrowski MJ, Wilcox LW, Cook ME, Wellman CH, Taylor W, Lewis LA, Arancibia-Avila P
J. Phycol. (2014) 50(2):280-91 - Putting incertae sedis taxa in their place: a proposal for ten new families and three new genera in Sphaeropleales (Chlorophyceae, Chlorophyta).
Fučíková K, Lewis PO, Lewis LA
J. Phycol. (2014) 50(1):14-25 2012
- Probing the Monophyly of the Sphaeropleales (Chlorophyceae) Using Data From Five Genes.
Tippery NP, Fučíková K, Lewis PO, Lewis LA
J. Phycol. (2012) 48(6):1482-93 - Chloroplast gene arrangement variation within a closely related group of green algae (Trebouxiophyceae, Chlorophyta).
Letsch MR, Lewis LA
Mol. Phylogenet. Evol. (2012) 64(3):524-32 2011
- Invasion of protein coding genes by green algal ribosomal group I introns.
McManus HA, Lewis LA, Fučíková K, Haugen P
Mol. Phylogenet. Evol. (2011) 62(1):109-16 - MOLECULAR PHYLOGENETIC RELATIONSHIPS IN THE FRESHWATER FAMILY HYDRODICTYACEAE (SPHAEROPLEALES, CHLOROPHYCEAE), WITH AN EMPHASIS ON PEDIASTRUM DUPLEX(1).
McManus HA, Lewis LA
J. Phycol. (2011) 47(1):152-63 - DISTINGUISHING MULTIPLE LINEAGES OF PEDIASTRUM DUPLEX WITH MORPHOMETRICS AND A PROPOSAL FOR LACUNASTRUM GEN. NOV(1).
McManus HA, Lewis LA, Schultz ET
J. Phycol. (2011) 47(1):123-30 2009
- ELLIPTOCHLORIS MARINA SP. NOV. (TREBOUXIOPHYCEAE, CHLOROPHYTA), SYMBIOTIC GREEN ALGA OF THE TEMPERATE PACIFIC SEA ANEMONES ANTHOPLEURA XANTHOGRAMMICA AND A. ELEGANTISSIMA (ANTHOZOA, CNIDARIA)(1).
Letsch MR, Muller-Parker G, Friedl T, Lewis LA
J. Phycol. (2009) 45(5):1127-35 2007
- Photosynthetic recovery following desiccation of desert green algae (Chlorophyta) and their aquatic relatives.
Gray DW, Lewis LA, Cardon ZG
Plant Cell Environ. (2007) 30(10):1240-55 2006
- Simultaneous collection of rapid chlorophyll fluorescence induction kinetics, fluorescence quenching parameters, and environmental data using an automated PAM-2000/CR10X data logging system.
Gray DW, Cardon ZG, Lewis LA
Photosyn. Res. (2006) 87(3):295-301 2005
- Unearthing the molecular phylodiversity of desert soil green algae (Chlorophyta).
Lewis LA, Lewis PO
Syst. Biol. (2005) 54(6):936-47 2004
- Phylogenetic placement of "zoochlorellae" (Chlorophyta), algal symbiont of the temperate sea anemone Anthopleura elegantissima.
Lewis LA, Muller-Parker G
Biol. Bull. (2004) 207(2):87-92 - Green algae and the origin of land plants.
Lewis LA, McCourt RM
Am. J. Bot. (2004) 91(10):1535-56