Publications: Joerg Graf
2022
- Insights from shotgun metagenomics into bacterial species and metabolic pathways associated with NAFLD in obese youth.
Testerman T, Li Z, Galuppo B, Graf J, Santoro N
Hepatology communications (2022) : 10.1002/hep4.1944 2021
- PmtA Regulates Pyocyanin Expression and Biofilm Formation in .
Thees AV, Pietrosimone KM, Melchiorre CK, Marden JN, Graf J, Lynes MA, Maltz-Matyschsyk M
Frontiers in microbiology (2021) 12:789765 PMC8636135 10.3389/fmicb.2021.789765 - Detecting Flavobacterial Fish Pathogens in the Environment via High-Throughput Community Analysis.
Testerman T, Beka L, McClure EA, Reichley SR, King S, Welch TJ, Graf J
Applied and environmental microbiology (2021) 88(2):e0209221 10.1128/AEM.02092-21 - Effects of Host Species Identity and Diet on the Biodiversity of the Microbiota in Puerto Rican Bats.
Presley SJ, Graf J, Hassan AF, Sjodin AR, Willig MR
Current microbiology (2021) 78(9):3526-3540 10.1371/journal.pone.0001425 - Draft Genome Sequence of Aeromonas popoffii ID682, Isolated from a Natural Water Source in Idaho.
Testerman T, Reichley SR, King S, Graf J
Microbiology resource announcements (2021) 10(29):e0044521 PMC8297452 10.1128/MRA.00445-21 - Draft Genome Sequence of Janthinobacterium lividum ID1246, Isolated from a Rainbow Trout Hatchery Biofilm.
Testerman T, Reichley SR, King S, Graf J
Microbiology resource announcements (2021) 10(28):e0044421 PMC8280877 10.1128/MRA.00444-21 - : Old World Leech Gut Microbial Community Structure Conserved in a New World Leech.
McClure EA, Nelson MC, Lin A, Graf J
Applied and environmental microbiology (2021) 87(10): PMC8117757 10.1128/AEM.02082-20 - High-Resolution Differentiation of Enteric Bacteria in Premature Infant Fecal Microbiomes Using a Novel rRNA Amplicon.
Graf J, Ledala N, Caimano MJ, Jackson E, Gratalo D, Fasulo D, Driscoll MD, Coleman S, Matson AP
mBio (2021) 12(1): PMC8545133 10.1128/mBio.03656-20 - Draft Genome Sequences of sp. Strains BGC7 and HGC4, Isolated from the Hindgut of a Lower Termite.
Bridges CM, Nelson MC, Graf J, Gage DJ
Microbiology resource announcements (2021) 10(4): PMC7844080 10.1128/MRA.01427-20 2020
- Closed Genome Sequence of Aeromonas veronii Strain Hm21, an Isolate from the Medicinal Leech Hirudo verbana.
Graf J, Nelson MC, Colston SM
Microbiology resource announcements (2020) 9(42): PMC7561689 10.1128/MRA.00922-20 - Effect of Gut Microbiota and PNPLA3 rs738409 Variant on Nonalcoholic Fatty Liver Disease (NAFLD) in Obese Youth.
Monga Kravetz A, Testerman T, Galuppo B, Graf J, Pierpont B, Siebel S, Feinn R, Santoro N
The Journal of clinical endocrinology and metabolism (2020) 105(10): PMC7458486 10.1210/clinem/dgaa382 - Gut Microbiota-Derived Short-Chain Fatty Acids Promote Poststroke Recovery in Aged Mice.
Lee J, d'Aigle J, Atadja L, Quaicoe V, Honarpisheh P, Ganesh BP, Hassan A, Graf J, Petrosino J, Putluri N, Zhu L, Durgan DJ, Bryan RM, McCullough LD, Venna VR
Circulation research (2020) 127(4):453-465 PMC7415518 10.1161/CIRCRESAHA.119.316448 - Comparative and Evolutionary Genomics of Isolates Provide Insight into the Pathoadaptation of Aeromonas.
Talagrand-Reboul E, Colston SM, Graf J, Lamy B, Jumas-Bilak E
Genome biology and evolution (2020) 12(5):535-552 PMC7250499 10.1093/gbe/evaa055 2019
- Identification and characterization of putative Aeromonas spp. T3SS effectors.
Rangel LT, Marden J, Colston S, Setubal JC, Graf J, Gogarten JP
PloS one (2019) 14(6):e0214035 PMC6548356 10.1371/journal.pone.0214035 - Flagellar regulation mediated by the Rcs pathway is required for virulence in the fish pathogen Yersinia ruckeri.
Jozwick AKS, LaPatra SE, Graf J, Welch TJ
Fish & shellfish immunology (2019) 91:306-314 10.1016/j.fsi.2019.05.036 - Evaluation of strategies for the assembly of diverse bacterial genomes using MinION long-read sequencing.
Goldstein S, Beka L, Graf J, Klassen JL
BMC genomics (2019) 20(1):23 PMC6325685 10.1186/s12864-018-5381-7 2018
- Genome-driven evaluation and redesign of PCR tools for improving the detection of virulence-associated genes in aeromonads.
Talagrand-Reboul E, Latif-Eugenín F, Beaz-Hidalgo R, Colston S, Figueras MJ, Graf J, Jumas-Bilak E, Lamy B
PLoS ONE (2018) 13(8):e0201428 (PMC6093642) 10.1371/journal.pone.0201428 - Microbiome Analyses for Toxicological Studies.
Benjamino J, Beka L, Graf J
Curr Protoc Toxicol (2018) :e53 10.1002/cptx.53 - Low-Level Antimicrobials in the Medicinal Leech Select for Resistant Pathogens That Spread to Patients.
Beka L, Fullmer MS, Colston SM, Nelson MC, Talagrand-Reboul E, Walker P, Ford B, Whitaker IS, Lamy B, Gogarten JP, Graf J
MBio (2018) 9(4): (PMC6058295) 10.1128/mBio.01328-18 - Early-life antibiotics attenuate regulatory T cell generation and increase the severity of murine house dust mite-induced asthma.
Adami AJ, Bracken SJ, Guernsey LA, Rafti E, Maas KR, Graf J, Matson AP, Thrall RS, Schramm CM
Pediatr. Res. (2018) 84(3):426-434 (PMC6258300) 10.1038/s41390-018-0031-y - Factors influencing bacterial microbiome composition in a wild non-human primate community in Taï National Park, Côte d'Ivoire.
Gogarten JF, Davies TJ, Benjamino J, Gogarten JP, Graf J, Mielke A, Mundry R, Nelson MC, Wittig RM, Leendertz FH, Calvignac-Spencer S
ISME J (2018) 12(10):2559-2574 (PMC6154966) 10.1038/s41396-018-0166-1 - Low-abundant bacteria drive compositional changes in the gut microbiota after dietary alteration.
Benjamino J, Lincoln S, Srivastava R, Graf J
Microbiome (2018) 6(1):86 (PMC5944116) 10.1186/s40168-018-0469-5 - Age-related changes in the gut microbiota influence systemic inflammation and stroke outcome.
Spychala MS, Venna VR, Jandzinski M, Doran SJ, Durgan DJ, Ganesh BP, Ajami NJ, Putluri N, Graf J, Bryan RM, McCullough LD
Ann. Neurol. (2018) 84(1):23-36 (PMC6119509) 10.1002/ana.25250 - Draft Genome Sequence of Aeromonas cavernicola sp. nov. DSM 24474, Isolated from a Cavern Brook in the Moravia Region of the Czech Republic.
Colston SM, Navarro A, Martinez-Murcia AJ, Graf J
Genome Announc (2018) 6(15): (PMC5897817) 10.1128/genomeA.00227-18 - Draft Genome Sequence of Aeromonas lusitana sp. nov. Strain DSM 24905, Isolated from a Hot Spring in Vila-Real, Portugal.
Colston SM, Navarro A, Martinez-Murcia AJ, Graf J
Genome Announc (2018) 6(15): (PMC5897795) 10.1128/genomeA.00226-18 2017
- Draft Genome Sequence of the Fish Pathogen Strain CSF-298-10.
Evenhuis JP, LaPatra SE, Graf J
Genome Announc (2017) 5(15): (PMC5391422) - Oxidized Derivatives of Linoleic Acid in Pediatric Metabolic Syndrome: Is Their Pathogenic Role Modulated by the Genetic Background and the Gut Microbiota?
Tricò D, Di Sessa A, Caprio S, Chalasani N, Liu W, Liang T, Graf J, Herzog RI, Johnson CD, Umano GR, Feldstein AE, Santoro N
Antioxidants & redox signaling (2017) 30(2):241-250 PMC6277079 10.1089/ars.2017.7049 - Influence of Feeding Type on Gut Microbiome Development in Hospitalized Preterm Infants.
Cong X, Judge M, Xu W, Diallo A, Janton S, Brownell EA, Maas K, Graf J
Nurs Res (2017) 66(2):123-133 (PMC5334772) 2016
- The flagellar master operon flhDC is a pleiotropic regulator involved in motility and virulence of the fish pathogen Yersinia ruckeri.
Jozwick AK, Graf J, Welch TJ
J. Appl. Microbiol. (2016) 122(3):578-588 - Role of Gut Microbiota and Short Chain Fatty Acids in Modulating Energy Harvest and Fat Partitioning in Youth.
Goffredo M, Mass K, Parks EJ, Wagner DA, McClure EA, Graf J, Savoye M, Pierpont B, Cline G, Santoro N
J. Clin. Endocrinol. Metab. (2016) 101(11):4367-4376 (PMC5095239) - Host Matters: Medicinal Leech Digestive-Tract Symbionts and Their Pathogenic Potential.
Marden JN, McClure EA, Beka L, Graf J
Front Microbiol (2016) 7:1569 (PMC5061737) - Draft Genome Sequence of Lactococcus garvieae Strain PAQ102015-99, an Outbreak Strain Isolated from a Commercial Trout Farm in the Northwestern United States.
Nelson MC, Varney JS, Welch TJ, Graf J
Genome Announc (2016) 4(4): (PMC4974324) - Lessons from Digestive-Tract Symbioses Between Bacteria and Invertebrates.
Graf J
Annu. Rev. Microbiol. (2016) 70:375-93 - Ischemic stroke induces gut permeability and enhances bacterial translocation leading to sepsis in aged mice.
Crapser J, Ritzel R, Verma R, Venna VR, Liu F, Chauhan A, Koellhoffer E, Patel A, Ricker A, Maas K, Graf J, McCullough LD
Aging (Albany NY) (2016) 8(5):1049-63 (PMC4931853) - Gut Microbiome Developmental Patterns in Early Life of Preterm Infants: Impacts of Feeding and Gender.
Cong X, Xu W, Janton S, Henderson WA, Matson A, McGrath JM, Maas K, Graf J
PLoS ONE (2016) 11(4):e0152751 (PMC4844123) - Characterization of the Core and Caste-Specific Microbiota in the Termite, Reticulitermes flavipes.
Benjamino J, Graf J
Front Microbiol (2016) 7:171 (PMC4756164) 2015
- Draft Genome Sequence of Pedobacter sp. Strain Hv1, an Isolate from Medicinal Leech Mucosal Castings.
Ott BM, Beka L, Graf J, Rio RV
Genome Announc (2015) 3(6): (PMC4683228) - Exposure to pairs of Aeromonas strains enhances virulence in the Caenorhabditis elegans infection model.
Mosser T, Talagrand-Reboul E, Colston SM, Graf J, Figueras MJ, Jumas-Bilak E, Lamy B
Front Microbiol (2015) 6:1218 (PMC4631986) - Impact of different ratios of feedstock to liquid anaerobic digestion effluent on the performance and microbiome of solid-state anaerobic digesters digesting corn stover.
Li YF, Shi J, Nelson MC, Chen PH, Graf J, Li Y, Yu Z
Bioresour. Technol. (2015) 200:744-52 - Identification of iron and heme utilization genes in Aeromonas and their role in the colonization of the leech digestive tract.
Maltz M, LeVarge BL, Graf J
Front Microbiol (2015) 6:763 (PMC4516982) - Early Life Experience and Gut Microbiome: The Brain-Gut-Microbiota Signaling System.
Cong X, Henderson WA, Graf J, McGrath JM
Adv Neonatal Care (2015) 15(5):314-23; quiz E1-2 (PMC4583334) - Effect of organic loading on the microbiota in a temperature-phased anaerobic digestion (TPAD) system co-digesting dairy manure and waste whey.
Li YF, Abraham C, Nelson MC, Chen PH, Graf J, Yu Z
Appl. Microbiol. Biotechnol. (2015) 99(20):8777-92 - Complete Genome Sequence of the Novel Leech Symbiont Mucinivorans hirudinis M3T.
Nelson MC, Bomar L, Graf J
Genome Announc (2015) 3(1): (PMC4319616) - Complete Genome Sequence of Yersinia ruckeri Strain CSF007-82, Etiologic Agent of Red Mouth Disease in Salmonid Fish.
Nelson MC, LaPatra SE, Welch TJ, Graf J
Genome Announc (2015) 3(1): (PMC4319512) - Mucinivorans hirudinis gen. nov., sp. nov., an anaerobic, mucin-degrading bacterium isolated from the digestive tract of the medicinal leech Hirudo verbana.
Nelson MC, Bomar L, Maltz M, Graf J
Int. J. Syst. Evol. Microbiol. (2015) 65(Pt 3):990-5 (PMC4811647) 2014
- Bioinformatic genome comparisons for taxonomic and phylogenetic assignments using Aeromonas as a test case.
Colston SM, Fullmer MS, Beka L, Lamy B, Gogarten JP, Graf J
MBio (2014) 5(6):e02136 (PMC4251997) - Metagenomic analysis of the medicinal leech gut microbiota.
Maltz MA, Bomar L, Lapierre P, Morrison HG, McClure EA, Sogin ML, Graf J
Front Microbiol (2014) 5:151 (PMC4029005) - Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.
Nelson MC, Morrison HG, Benjamino J, Grim SL, Graf J
PLoS ONE (2014) 9(4):e94249 (PMC3983156) - Characterization of the digestive tract microbiota of Hirudo orientalis (medicinal leech) and antibiotic resistance profile.
Whitaker IS, Maltz M, Siddall ME, Graf J
Plast. Reconstr. Surg. (2014) 133(3):408e-418e 2013
- Draft Genome Sequence of Aeromonas veronii Hm21, a Symbiotic Isolate from the Medicinal Leech Digestive Tract.
Bomar L, Stephens WZ, Nelson MC, Velle K, Guillemin K, Graf J
Genome Announc (2013) 1(5): (PMC3790095) 2012
- Knowing your friends: invertebrate innate immunity fosters beneficial bacterial symbioses.
Nyholm SV, Graf J
Nat. Rev. Microbiol. (2012) 10(12):815-27 (PMC3870473) - Investigation into the physiologies of Aeromonas veronii in vitro and inside the digestive tract of the medicinal leech using RNA-seq.
Bomar L, Graf J
Biol. Bull. (2012) 223(1):155-66 (PMC3732745) - Bacterial symbioses of the medicinal leech Hirudo verbana.
Nelson MC, Graf J
Gut Microbes (2012) 3(4):322-31 (PMC3463490) 2011
- Shifting paradigm on Bacillus thuringiensis toxin and a natural model for Enterococcus faecalis septicemia.
Graf J
MBio (2011) 2(4): (PMC3157895) - Directed culturing of microorganisms using metatranscriptomics.
Bomar L, Maltz M, Colston S, Graf J
MBio (2011) 2(2):e00012-11 (PMC3069634) - Complex evolutionary history of the Aeromonas veronii group revealed by host interaction and DNA sequence data.
Silver AC, Williams D, Faucher J, Horneman AJ, Gogarten JP, Graf J
PLoS ONE (2011) 6(2):e16751 (PMC3040217) 2010
- The type II secretion system is essential for erythrocyte lysis and gut colonization by the leech digestive tract symbiont Aeromonas veronii.
Maltz M, Graf J
Appl. Environ. Microbiol. (2010) 77(2):597-603 (PMC3020562) 2009
- Stratified bacterial community in the bladder of the medicinal leech, Hirudo verbana.
Kikuchi Y, Bomar L, Graf J
Environ. Microbiol. (2009) 11(10):2758-70 - Prevalence of genes encoding the type three secretion system and the effectors AexT and AexU in the Aeromonas veronii group.
Silver AC, Graf J
DNA Cell Biol. (2009) 28(8):383-8 - Preventing infective complications following leech therapy: is practice keeping pace with current research?
Whitaker IS, Kamya C, Azzopardi EA, Graf J, Kon M, Lineaweaver WC
Microsurgery (2009) 29(8):619-25 2008
- Characterization of the digestive-tract microbiota of Hirudo orientalis, a european medicinal leech.
Laufer AS, Siddall ME, Graf J
Appl. Environ. Microbiol. (2008) 74(19):6151-4 (PMC2565982) - An improved cell recovery method for iron oxidizing bacterial (IOB) enrichments.
Yu R, Graf J, Smets BF
J. Microbiol. Methods (2008) 72(3):235-40 2007
- Identification of Aeromonas veronii genes required for colonization of the medicinal leech, Hirudo verbana.
Silver AC, Rabinowitz NM, Küffer S, Graf J
J. Bacteriol. (2007) 189(19):6763-72 (PMC2045196) - Characterization of a catalase gene from Aeromonas veronii, the digestive-tract symbiont of the medicinal leech.
Rio RV, Anderegg M, Graf J
Microbiology (Reading, Engl.) (2007) 153(Pt 6):1897-906 - Interaction between innate immune cells and a bacterial type III secretion system in mutualistic and pathogenic associations.
Silver AC, Kikuchi Y, Fadl AA, Sha J, Chopra AK, Graf J
Proc. Natl. Acad. Sci. U.S.A. (2007) 104(22):9481-6 (PMC1890520) - Spatial and temporal population dynamics of a naturally occurring two-species microbial community inside the digestive tract of the medicinal leech.
Kikuchi Y, Graf J
Appl. Environ. Microbiol. (2007) 73(6):1984-91 (PMC1828818) 2006
- Leeches and their microbiota: naturally simple symbiosis models.
Graf J, Kikuchi Y, Rio RV
Trends Microbiol. (2006) 14(8):365-71 - Culture-independent characterization of the digestive-tract microbiota of the medicinal leech reveals a tripartite symbiosis.
Worthen PL, Gode CJ, Graf J
Appl. Environ. Microbiol. (2006) 72(7):4775-81 (PMC1489327) - Molecular requirements for the colonization of Hirudo medicinalis by Aeromonas veronii.
Graf J
Prog. Mol. Subcell. Biol. (2006) 41:291-303