Publications: Daniel Bolnick

• 2024

• Speciation.
  Peichel CL, Bolnick DI, Brännström Å, Dieckmann U, Safran RJ
  Cold Spring Harbor perspectives in biology (2024) : 10.1101/cshperspect.a041735
• Predictable and Divergent Change in the Multivariate Matrix during Parallel Adaptation.
  De Lisle SP, Bolnick DI, Stuart YE
  The American naturalist (2024) 204(1):15-29 10.1086/730261
• A spectral framework to map QTLs affecting joint differential networks of gene co-expression.
  Hu J, Weber JN, Fuess LE, Steinel NC, Bolnick DI, Wang M
  bioRxiv : the preprint server for biology (2024) : PMC5655846 10.1101/2024.03.29.587398

• 2023

• Locomotor effects of a fibrosis-based immune response in stickleback fish.
  Matthews DG, Maciejewski MF, Wong GA, Lauder GV, Bolnick DI
  The Journal of experimental biology (2023) 226(23): 10.1242/jeb.246684
• Contemporary changes in phenotypic variation, and the potential consequences for eco-evolutionary dynamics.
  Sanderson S, Bolnick DI, Kinnison MT, O'Dea RE, Gorné LD, Hendry AP, Gotanda KM
  Ecology letters (2023) 26 Suppl 1:S127-S139 10.1111/ele.14186
• Locomotor effects of a fibrosis-based immune response in stickleback fish.
  Matthews DG, Maciejewski MF, Wong GA, Lauder GV, Bolnick DI
  bioRxiv : the preprint server for biology (2023) : PMC1200442 10.1101/2023.06.24.546342
• Opening a can of worms: a test of the co-infection facilitation hypothesis.
  Rodgers ML, Bolnick DI
  Oecologia (2023) 204(2):317-325 PMC9869647 10.1126/science.abo3411
• Elemental content of a host-parasite relationship in the threespine stickleback.
  Grunberg RL, Braat M, Bolnick DI
  Oecologia (2023) 204(2):427-437 10.1073/pnas.1620095114
• Opening a can of worms: a test of the coinfection facilitation hypothesis.
  Rodgers ML, Bolnick DI
  bioRxiv : the preprint server for biology (2023) : PMC10245757 10.1101/2023.05.18.541347
• Local adaptation and host specificity to copepod intermediate hosts by the tapeworm .
  Shim KC, Peterson CR, Bolnick DI
  Ecology and evolution (2023) 13(6):e10155 PMC5488926 10.1126/science.abo3411
• Understanding the evolution of immune genes in jawed vertebrates.
  Vinkler M, Fiddaman SR, Těšický M, O'Connor EA, Savage AE, Lenz TL, Smith AL, Kaufman J, Bolnick DI, Davies CS, Dedić N, Flies AS, Samblás MMG, Henschen AE, Novák K, Palomar G, Raven N, Samaké K, Slade J, Veetil NK, Voukali E, Höglund J, Richardson DS, Westerdahl H
  Journal of evolutionary biology (2023) 36(6):847-873 PMC7936018 10.1093/gbe/evab023
• Single-Cell RNA Sequencing Reveals Microevolution of the Stickleback Immune System.
  Fuess LE, Bolnick DI
  Genome biology and evolution (2023) 15(4): PMC5241818 10.1093/gbe/evad053
• The dominance of coinfecting parasites' indirect effects on host traits.
  Bolnick DI, Arruda S, Polania C, Simonse L, Padhiar A, Roth A, Rodgers ML
  bioRxiv : the preprint server for biology (2023) : PMC8308605 10.1101/2022.05.15.491937

• 2022

• Species divergence under competition and shared predation.
  Roesti M, Groh JS, Blain SA, Huss M, Rassias P, Bolnick DI, Stuart YE, Peichel CL, Schluter D
  Ecology letters (2022) 26(1):111-123 10.1111/ele.14138
• Evolutionary gain and loss of a pathological immune response to parasitism.
  Weber JN, Steinel NC, Peng F, Shim KC, Lohman BK, Fuess LE, Subramanian S, Lisle SP, Bolnick DI
  Science (New York, N.Y.) (2022) 377(6611):1206-1211 PMC7901769 10.1126/sciadv.abg5285
• Complex community-wide consequences of consumer sexual dimorphism.
  De Lisle SP, Schrieber SJ, Bolnick DI
  The Journal of animal ecology (2022) 91(5):958-969 PMC5949143 10.1007/s00285-017-1187-5
• Interacting phenotypes and the coevolutionary process: Interspecific indirect genetic effects alter coevolutionary dynamics.
  De Lisle SP, Bolnick DI, Brodie ED, Moore AJ, McGlothlin JW
  Evolution; international journal of organic evolution (2022) 76(3):429-444 PMC153611 10.1101/503904

• 2021

• An insight into molecular taxonomy of bufonids, microhylids, and dicroglossid frogs: First genetic records from Pakistan.
  Akram A, Rais M, Lopez-Hervas K, Tarvin RD, Saeed M, Bolnick DI, Cannatella DC
  Ecology and evolution (2021) 11(20):14175-14216 PMC8525160 10.1002/ece3.8134
• Between-population differences in constitutive and infection-induced gene expression in threespine stickleback.
  Fuess LE, Weber JN, den Haan S, Steinel NC, Shim KC, Bolnick DI
  Molecular ecology (2021) 30(24):6791-6805 PMC6345051 10.1186/s13567-019-0622-6
• Sick of eating: Eco-evo-immuno dynamics of predators and their trophically acquired parasites.
  Fleischer SR, Bolnick DI, Schreiber SJ
  Evolution; international journal of organic evolution (2021) 75(11):2842-2856 PMC8985590 10.1111/evo.14353
• Copy number variation of a fatty acid desaturase gene associated with ecological divergence in freshwater stickleback populations.
  Ishikawa A, Stuart YE, Bolnick DI, Kitano J
  Biology letters (2021) 17(8):20210204 PMC8385377 10.1098/rsbl.2021.0204
• Macroevolutionary foundations of a recently evolved innate immune defense.
  Vrtílek M, Bolnick DI
  Evolution; international journal of organic evolution (2021) 75(10):2600-2612 PMC8488947 10.1111/evo.14316
• Editorial Expression of Concern.
  Bolnick DI, Fox JW, Débarre F, Dietrich EI, Phelps SM, Jordan A, Torminalis S
  The American naturalist (2021) 198(2):313-316 10.1086/714867
• Editorial Expression of Concern.
  Bolnick DI
  The American naturalist (2021) 198(1):177 10.1086/714375
• Male and female reproductive fitness costs of an immune response in natural populations.
  De Lisle SP, Bolnick DI
  Evolution; international journal of organic evolution (2021) 75(10):2509-2523 PMC8488946 10.1111/evo.14266
• Immune Gene Expression Covaries with Gut Microbiome Composition in Stickleback.
  Fuess LE, den Haan S, Ling F, Weber JN, Steinel NC, Bolnick DI
  mBio (2021) 12(3): PMC8262870 10.1128/mBio.00145-21
• Nothing in Evolution Makes Sense Except in the Light of Biology.
  Reiskind MOB, Moody ML, Bolnick DI, Hanifin CT, Farrior CE
  Bioscience (2021) 71(4):370-382 PMC8038875 10.1093/biosci/biaa170
• What evolutionary processes maintain MHC IIꞵ diversity within and among populations of stickleback?
  Peng F, Ballare KM, Hollis Woodard S, den Haan S, Bolnick DI
  Molecular ecology (2021) 30(7):1659-1671 PMC8049082 10.1111/mec.15840

• 2020

• Adding the third dimension to studies of parallel evolution of morphology and function: An exploration based on parapatric lake-stream stickleback.
  Haines GE, Stuart YE, Hanson D, Tasneem T, Bolnick DI, Larsson HCE, Hendry AP
  Ecology and evolution (2020) 10(23):13297-13311 PMC7713967 10.1002/ece3.6929
• The genomic signature of ecological divergence along the benthic-limnetic axis in allopatric and sympatric threespine stickleback.
  Härer A, Bolnick DI, Rennison DJ
  Molecular ecology (2020) 30(2):451-463 10.1111/mec.15746
• Trends and Transitions in 150 Years of .
  Smocovitis VB, Bolnick DI, Moore CM, Morse PL
  The American naturalist (2020) 196(6):663-678 10.1086/711418
• Scale-dependent effects of host patch traits on species composition in a stickleback parasite metacommunity.
  Bolnick DI, Resetarits EJ, Ballare K, Stuart YE, Stutz WE
  Ecology (2020) 101(12):e03181 PMC7757261 10.1002/ecy.3181
• Immune-challenged vampire bats produce fewer contact calls.
  Stockmaier S, Bolnick DI, Page RA, Josic D, Carter GG
  Biology letters (2020) 16(7):20200272 PMC7423039 10.1098/rsbl.2020.0272
• A multivariate view of parallel evolution.
  De Lisle SP, Bolnick DI
  Evolution; international journal of organic evolution (2020) 74(7):1466-1481 10.1111/evo.14035
• Host-microbiota interaction helps to explain the bottom-up effects of climate change on a small rodent species.
  Li G, Yin B, Li J, Wang J, Wei W, Bolnick DI, Wan X, Zhu B, Zhang Z
  The ISME journal (2020) 14(7):1795-1808 PMC7305154 10.1038/s41396-020-0646-y
• Sickness effects on social interactions depend on the type of behaviour and relationship.
  Stockmaier S, Bolnick DI, Page RA, Carter GG
  The Journal of animal ecology (2020) 89(6):1387-1394 10.1111/1365-2656.13193
• Microhabitat contributes to microgeographic divergence in threespine stickleback.
  Maciejewski MF, Jiang C, Stuart YE, Bolnick DI
  Evolution; international journal of organic evolution (2020) 74(4):749-763 10.1111/evo.13942
• The gut microbiota response to helminth infection depends on host sex and genotype.
  Ling F, Steinel N, Weber J, Ma L, Smith C, Correa D, Zhu B, Bolnick D, Wang G
  The ISME journal (2020) 14(5):1141-1153 PMC7174316 10.1038/s41396-020-0589-3
• Resource diversity promotes among-individual diet variation, but not genomic diversity, in lake stickleback.
  Bolnick DI, Ballare KM
  Ecology letters (2020) 23(3):495-505 PMC7325224 10.1111/ele.13448

• 2019

• Biased movement drives local cryptic coloration on distinct urban pavements.
  Edelaar P, Baños-Villalba A, Quevedo DP, Escudero G, Bolnick DI, Jordán-Andrade A
  Proceedings. Biological sciences (2019) 286(1912):20191343 PMC6790761 10.1098/rspb.2019.1343
• Understanding Maladaptation by Uniting Ecological and Evolutionary Perspectives.
  Brady SP, Bolnick DI, Barrett RDH, Chapman L, Crispo E, Derry AM, Eckert CG, Fraser DJ, Fussmann GF, Gonzalez A, Guichard F, Lamy T, Lane J, McAdam AG, Newman AEM, Paccard A, Robertson B, Rolshausen G, Schulte PM, Simons AM, Vellend M, Hendry A
  The American naturalist (2019) 194(4):495-515 10.1086/705020
• Causes of maladaptation.
  Brady SP, Bolnick DI, Angert AL, Gonzalez A, Barrett RDH, Crispo E, Derry AM, Eckert CG, Fraser DJ, Fussmann GF, Guichard F, Lamy T, McAdam AG, Newman AEM, Paccard A, Rolshausen G, Simons AM, Hendry AP
  Evolutionary applications (2019) 12(7):1229-1242 PMC6691215 10.1111/eva.12844
• Ecological factors and morphological traits are associated with repeated genomic differentiation between lake and stream stickleback.
  Rennison DJ, Stuart YE, Bolnick DI, Peichel CL
  Philosophical transactions of the Royal Society of London. Series B, Biological sciences (2019) 374(1777):20180241 PMC6560272 10.1098/rstb.2018.0241
• The evolution of hybrid fitness during speciation.
  Dagilis AJ, Kirkpatrick M, Bolnick DI
  PLoS genetics (2019) 15(5):e1008125 PMC6502311 10.1371/journal.pgen.1008125
• Appreciating the Multiple Processes Increasing Individual or Population Fitness.
  Edelaar P, Bolnick DI
  Trends in ecology & evolution (2019) 34(5):435-446 10.1016/j.tree.2019.02.001

• 2018

• "Her Joyous Enthusiasm for Her Life-Work …": Early Women Authors in The American Naturalist.
  Bronstein JL, Bolnick DI
  Am. Nat. (2018) 192(6):655-663 10.1086/700119
• Opsin expression predicts male nuptial color in threespine stickleback.
  Brock CD, Rennison D, Veen T, Bolnick DI
  Ecol Evol (2018) 8(14):7094-7102 (PMC6065272) 10.1002/ece3.4231
• Geographical variation in colour of female threespine stickleback ().
  French CM, Ingram T, Bolnick DI
  PeerJ (2018) 6:e4807 (PMC5960269) 10.7717/peerj.4807
• Systematic analysis of complex genetic interactions.
  Kuzmin E, VanderSluis B, Wang W, Tan G, Deshpande R, Chen Y, Usaj M, Balint A, Mattiazzi Usaj M, van Leeuwen J, Koch EN, Pons C, Dagilis AJ, Pryszlak M, Wang JZY, Hanchard J, Riggi M, Xu K, Heydari H, San Luis BJ, Shuteriqi E, Zhu H, Van Dyk N, Sharifpoor S, Costanzo M, Loewith R, Caudy A, Bolnick D, Brown GW, Andrews BJ, Boone C, Myers CL
  Science (2018) 360(6386): (PMC6215713) 10.1126/science.aao1729

• 2017

• Letter from the Editor.
  Bolnick DI
  Am. Nat. (2017) 191(1):iii-v 10.1086/694918
• Gene Expression Contributes to the Recent Evolution of Host Resistance in a Model Host Parasite System.
  Lohman BK, Steinel NC, Weber JN, Bolnick DI
  Front Immunol (2017) 8:1071 (PMC5600903)
• Many-to-one form-to-function mapping weakens parallel morphological evolution.
  Thompson CJ, Ahmed NI, Veen T, Peichel CL, Hendry AP, Bolnick DI, Stuart YE
  Evolution (2017) 71(11):2738-2749
• Contrasting effects of environment and genetics generate a continuum of parallel evolution.
  Stuart YE, Veen T, Weber JN, Hanson D, Ravinet M, Lohman BK, Thompson CJ, Tasneem T, Doggett A, Izen R, Ahmed N, Barrett RDH, Hendry AP, Peichel CL, Bolnick DI
  Nat Ecol Evol (2017) 1(6):158
• Melanomacrophage Centers As a Histological Indicator of Immune Function in Fish and Other Poikilotherms.
  Steinel NC, Bolnick DI
  Front Immunol (2017) 8:827 (PMC5512340)
• Parasite Microbiome Project: Systematic Investigation of Microbiome Dynamics within and across Parasite-Host Interactions.
  Dheilly NM, Bolnick D, Bordenstein S, Brindley PJ, Figuères C, Holmes EC, Martínez Martínez J, Phillips AJ, Poulin R, Rosario K
  mSystems (2017) 2(4): (PMC5516220)
• Gene expression stasis and plasticity following migration into a foreign environment.
  Lohman BK, Stutz WE, Bolnick DI
  Mol. Ecol. (2017) 26(18):4657-4670
• Phenotypic plasticity drives a depth gradient in male conspicuousness in threespine stickleback, Gasterosteus aculeatus.
  Brock CD, Cummings ME, Bolnick DI
  Evolution (2017) 71(8):2022-2036
• Recent evolution of extreme cestode growth suppression by a vertebrate host.
  Weber JN, Steinel NC, Shim KC, Bolnick DI
  Proc. Natl. Acad. Sci. U.S.A. (2017) 114(25):6575-6580 (PMC5488926)
• Plasticity contributes to a fine-scale depth gradient in sticklebacks' visual system.
  Veen T, Brock C, Rennison D, Bolnick D
  Mol. Ecol. (2017) 26(16):4339-4350
• Frequency dependence limits divergent evolution by favouring rare immigrants over residents.
  Bolnick DI, Stutz WE
  Nature (2017) 546(7657):285-288
• Brain morphology of the threespine stickleback () varies inconsistently with respect to habitat complexity: A test of the Clever Foraging Hypothesis.
  Ahmed NI, Thompson C, Bolnick DI, Stuart YE
  Ecol Evol (2017) 7(10):3372-3380 (PMC5433989)
• Natural selection on MHC IIβ in parapatric lake and stream stickleback: Balancing, divergent, both or neither?
  Stutz WE, Bolnick DI
  Mol. Ecol. (2017) 26(18):4772-4786
• Clines Arc through Multivariate Morphospace.
  Lohman BK, Berner D, Bolnick DI
  Am. Nat. (2017) 189(4):354-367

• 2016

• Resist Globally, Infect Locally: A Transcontinental Test of Adaptation by Stickleback and Their Tapeworm Parasite.
  Weber JN, Kalbe M, Shim KC, Erin NI, Steinel NC, Ma L, Bolnick DI
  Am. Nat. (2016) 189(1):43-57
• Behavioural hypervolumes of spider communities predict community performance and disbandment.
  Pruitt JN, Bolnick DI, Sih A, DiRienzo N, Pinter-Wollman N
  Proc. Biol. Sci. (2016) 283(1844): (PMC5204141)
• Partitioning the effects of isolation by distance, environment, and physical barriers on genomic divergence between parapatric threespine stickleback.
  Weber JN, Bradburd GS, Stuart YE, Stutz WE, Bolnick DI
  Evolution (2016) 71(2):342-356
• Intruder colour and light environment jointly determine how nesting male stickleback respond to simulated territorial intrusions.
  Bolnick DI, Hendrix K, Jordan LA, Veen T, Brock CD
  Biol. Lett. (2016) 12(8): (PMC5014039)
• Evaluation of TagSeq, a reliable low-cost alternative for RNAseq.
  Lohman BK, Weber JN, Bolnick DI
  Mol Ecol Resour (2016) 16(6):1315-1321

• 2015

• Widespread positive but weak assortative mating by diet within stickleback populations.
  Ingram T, Jiang Y, Rangel R, Bolnick DI
  Ecol Evol (2015) 5(16):3352-63 (PMC4569031)
• Differences in rheotactic responses contribute to divergent habitat use between parapatric lake and stream threespine stickleback.
  Jiang Y, Torrance L, Peichel CL, Bolnick DI
  Evolution (2015) 69(9):2517-24
• Among-lake reciprocal transplants induce convergent expression of immune genes in threespine stickleback.
  Stutz WE, Schmerer M, Coates JL, Bolnick DI
  Mol. Ecol. (2015) 24(18):4629-46
• Population-Specific Covariation between Immune Function and Color of Nesting Male Threespine Stickleback.
  Bolnick DI, Shim KC, Schmerer M, Brock CD
  PLoS ONE (2015) 10(6):e0126000 (PMC4454680)
• Female stickleback prefer shallow males: Sexual selection on nest microhabitat.
  Bolnick DI, Shim KC, Brock CD
  Evolution (2015) 69(6):1643-1653
• Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota.
  Smith CC, Snowberg LK, Gregory Caporaso J, Knight R, Bolnick DI
  ISME J (2015) 9(11):2515-26 (PMC4611514)
• Covarying variances: more morphologically variable populations also exhibit more diet variation.
  Snowberg LK, Hendrix KM, Bolnick DI
  Oecologia (2015) 178(1):89-101

• 2014

• Intraspecific competition reduces niche width in experimental populations.
  Parent CE, Agashe D, Bolnick DI
  Ecol Evol (2014) 4(20):3978-90 (PMC4242580)
• Demystifying the RAD fad.
  Puritz JB, Matz MV, Toonen RJ, Weber JN, Bolnick DI, Bird CE
  Mol. Ecol. (2014) 23(24):5937-42
• Mistaking geography for biology: inferring processes from species distributions.
  Warren DL, Cardillo M, Rosauer DF, Bolnick DI
  Trends Ecol. Evol. (Amst.) (2014) 29(10):572-80
• Individual diet has sex-dependent effects on vertebrate gut microbiota.
  Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Org E, Parks B, Lusis AJ, Knight R, Caporaso JG, Svanbäck R
  Nat Commun (2014) 5:4500 (PMC4279269)
• Stepwise threshold clustering: a new method for genotyping MHC loci using next-generation sequencing technology.
  Stutz WE, Bolnick DI
  PLoS ONE (2014) 9(7):e100587 (PMC4103772)
• Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity.
  Bolnick DI, Snowberg LK, Caporaso JG, Lauber C, Knight R, Stutz WE
  Mol. Ecol. (2014) 23(19):4831-45
• Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch).
  Bolnick DI, Snowberg LK, Hirsch PE, Lauber CL, Knight R, Caporaso JG, Svanbäck R
  Ecol. Lett. (2014) 17(8):979-87 (PMC4084827)
• Contrasting patterns of phenotype-dependent parasitism within and among populations of threespine stickleback.
  Stutz WE, Lau OL, Bolnick DI
  Am. Nat. (2014) 183(6):810-25
• Microgeographic adaptation and the spatial scale of evolution.
  Richardson JL, Urban MC, Bolnick DI, Skelly DK
  Trends Ecol. Evol. (Amst.) (2014) 29(3):165-76

• 2013

• The magnitude of local adaptation under genotype-dependent dispersal.
  Bolnick DI, Otto SP
  Ecol Evol (2013) 3(14):4722-35 (PMC3867907)
• Evolutionary inferences from the analysis of exchangeability.
  Hendry AP, Kaeuffer R, Crispo E, Peichel CL, Bolnick DI
  Evolution (2013) 67(12):3429-41 (PMC3852416)
• Asymmetric selection and the evolution of extraordinary defences.
  Urban MC, Bürger R, Bolnick DI
  Nat Commun (2013) 4:2085 (PMC3710097)
• Assortative mating in animals.
  Jiang Y, Bolnick DI, Kirkpatrick M
  Am. Nat. (2013) 181(6):E125-38

• 2012

• An evolutionary ecology of individual differences.
  Dall SR, Bell AM, Bolnick DI, Ratnieks FL
  Ecol. Lett. (2012) 15(10):1189-98 (PMC3962499)
• Non-random gene flow: an underappreciated force in evolution and ecology.
  Edelaar P, Bolnick DI
  Trends Ecol. Evol. (Amst.) (2012) 27(12):659-65
• Parallel and nonparallel aspects of ecological, phenotypic, and genetic divergence across replicate population pairs of lake and stream stickleback.
  Kaeuffer R, Peichel CL, Bolnick DI, Hendry AP
  Evolution (2012) 66(2):402-18 (PMC4499166)

• 2011

• The community effects of phenotypic and genetic variation within a predator population.
  Schreiber SJ, Bürger R, Bolnick DI
  Ecology (2011) 92(8):1582-93
• Effects of founding genetic variation on adaptation to a novel resource.
  Agashe D, Falk JJ, Bolnick DI
  Evolution (2011) 65(9):2481-91
• The ecological causes of individual specialisation.
  Araújo MS, Bolnick DI, Layman CA
  Ecol. Lett. (2011) 14(9):948-58
• Does intraspecific size variation in a predator affect its diet diversity and top-down control of prey?
  Ingram T, Stutz WE, Bolnick DI
  PLoS ONE (2011) 6(6):e20782 (PMC3110768)
• Why intraspecific trait variation matters in community ecology.
  Bolnick DI, Amarasekare P, Araújo MS, Bürger R, Levine JM, Novak M, Rudolf VH, Schreiber SJ, Urban MC, Vasseur DA
  Trends Ecol. Evol. (Amst.) (2011) 26(4):183-92 (PMC3088364)

• 2010

• Intraspecific genetic variation and competition interact to influence niche expansion.
  Agashe D, Bolnick DI
  Proc. Biol. Sci. (2010) 277(1696):2915-24 (PMC2982016)
• Specialization of trophic position and habitat use by sticklebacks in an adaptive radiation.
  Matthews B, Marchinko KB, Bolnick DI, Mazumder A
  Ecology (2010) 91(4):1025-34
• Foraging trait (co)variances in stickleback evolve deterministically and do not predict trajectories of adaptive diversification.
  Berner D, Stutz WE, Bolnick DI
  Evolution (2010) 64(8):2265-77
• Ecological release from interspecific competition leads to decoupled changes in population and individual niche width.
  Bolnick DI, Ingram T, Stutz WE, Snowberg LK, Lau OL, Paull JS
  Proc. Biol. Sci. (2010) 277(1689):1789-97 (PMC2871882)

• 2009

• Phenotype-dependent native habitat preference facilitates divergence between parapatric lake and stream stickleback.
  Bolnick DI, Snowberg LK, Patenia C, Stutz WE, Ingram T, Lau OL
  Evolution (2009) 63(8):2004-16
• The shape of the competition and carrying capacity kernels affects the likelihood of disruptive selection.
  Baptestini EM, de Aguiar MA, Bolnick DI, Araújo MS
  J. Theor. Biol. (2009) 259(1):5-11
• Resource dynamics influence the strength of non-consumptive predator effects on prey.
  Preisser EL, Bolnick DI, Grabowski JH
  Ecol. Lett. (2009) 12(4):315-23

• 2008

• Assortative mating by diet in a phenotypically unimodal but ecologically variable population of stickleback.
  Snowberg LK, Bolnick DI
  Am. Nat. (2008) 172(5):733-9
• Revisiting the classics: considering nonconsumptive effects in textbook examples of predator-prey interactions.
  Peckarsky BL, Abrams PA, Bolnick DI, Dill LM, Grabowski JH, Luttbeg B, Orrock JL, Peacor SD, Preisser EL, Schmitz OJ, Trussell GC
  Ecology (2008) 89(9):2416-25
• When predators don't eat their prey: nonconsumptive predator effects on prey dynamics.
  Preisser EL, Bolnick DI
  Ecology (2008) 89(9):2414-5
• Network analysis reveals contrasting effects of intraspecific competition on individual vs. population diets.
  Araújo MS, Guimarães PR, Svanbäck R, Pinheiro A, Guimarães P, Dos Reis SF, Bolnick DI
  Ecology (2008) 89(7):1981-93
• The many faces of fear: comparing the pathways and impacts of nonconsumptive predator effects on prey populations.
  Preisser EL, Bolnick DI
  PLoS ONE (2008) 3(6):e2465 (PMC2409076)
• Reverse evolution of armor plates in the threespine stickleback.
  Kitano J, Bolnick DI, Beauchamp DA, Mazur MM, Mori S, Nakano T, Peichel CL
  Curr. Biol. (2008) 18(10):769-774
• Predictable patterns of disruptive selection in stickleback in postglacial lakes.
  Bolnick DI, Lau OL
  Am. Nat. (2008) 172(1):1-11
• Accelerated mitochondrial evolution and "Darwin's corollary": asymmetric viability of reciprocal F1 hybrids in Centrarchid fishes.
  Bolnick DI, Turelli M, López-Fernández H, Wainwright PC, Near TJ
  Genetics (2008) 178(2):1037-48 (PMC2248366)

• 2007

• What causes partial F1 hybrid viability? Incomplete penetrance versus genetic variation.
  López-Fernández H, Bolnick DI
  PLoS ONE (2007) 2(12):e1294 (PMC2121587)
• Natural selection in populations subject to a migration load.
  Bolnick DI, Nosil P
  Evolution (2007) 61(9):2229-43
• Behavioural genetics: evolutionary fingerprint of the 'invisible hand'.
  Bolnick DI
  Curr. Biol. (2007) 17(15):R596-7
• Comparative support for the niche variation hypothesis that more generalized populations also are more heterogeneous.
  Bolnick DI, Svanbäck R, Araújo MS, Persson L
  Proc. Natl. Acad. Sci. U.S.A. (2007) 104(24):10075-9 (PMC1891261)
• Using delta13C stable isotopes to quantify individual-level diet variation.
  Araújo MS, Bolnick DI, Machado G, Giaretta AA, dos Reis SF
  Oecologia (2007) 152(4):643-54
• Intraspecific competition drives increased resource use diversity within a natural population.
  Svanbäck R, Bolnick DI
  Proc. Biol. Sci. (2007) 274(1611):839-44 (PMC2093969)

• 2006

• Asymmetric male and female genetic histories among Native Americans from Eastern North America.
  Bolnick DA, Bolnick DI, Smith DG
  Mol. Biol. Evol. (2006) 23(11):2161-74
• Multi-species outcomes in a common model of sympatric speciation.
  Bolnick DI
  J. Theor. Biol. (2006) 241(4):734-44

• 2005

• Fossil calibrations and molecular divergence time estimates in centrarchid fishes (Teleostei: Centrarchidae).
  Near TJ, Bolnick DI, Wainwright PC
  Evolution (2005) 59(8):1768-82
• Tempo of hybrid inviability in centrarchid fishes (Teleostei: Centrarchidae).
  Bolnick DI, Near TJ
  Evolution (2005) 59(8):1754-67
• Evolutionary consequences of many-to-one mapping of jaw morphology to mechanics in labrid fishes.
  Alfaro ME, Bolnick DI, Wainwright PC
  Am. Nat. (2005) 165(6):E140-54
• Many-to-One Mapping of Form to Function: A General Principle in Organismal Design?
  Wainwright PC, Alfaro ME, Bolnick DI, Hulsey CD
  Integr. Comp. Biol. (2005) 45(2):256-62

• 2004

• Investigating phylogenetic relationships of sunfishes and black basses (Actinopterygii: Centrarchidae) using DNA sequences from mitochondrial and nuclear genes.
  Near TJ, Bolnick DI, Wainwright PC
  Mol. Phylogenet. Evol. (2004) 32(1):344-57
• Waiting for sympatric speciation.
  Bolnick DI
  Evolution (2004) 58(4):895-9
• Can intraspecific competition drive disruptive selection? An experimental test in natural populations of sticklebacks.
  Bolnick DI
  Evolution (2004) 58(3):608-18
• Evolutionary dynamics of complex biomechanical systems: an example using the four-bar mechanism.
  Alfaro ME, Bolnick DI, Wainwright PC
  Evolution (2004) 58(3):495-503

• 2003

• Sexual dimorphism and adaptive speciation: two sides of the same ecological coin.
  Bolnick DI, Doebeli M
  Evolution (2003) 57(11):2433-49
• The ecology of individuals: incidence and implications of individual specialization.
  Bolnick DI, Svanbäck R, Fordyce JA, Yang LH, Davis JM, Hulsey CD, Forister ML
  Am. Nat. (2003) 161(1):1-28

• 2002

• Using functional morphology to examine the ecology and evolution of specialization.
  Ferry-Graham LA, Bolnick DI, Wainwright PC
  Integr. Comp. Biol. (2002) 42(2):265-77

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