Publications: Chris Simon
2022
- Lack of host phylogenetic structure in the gut bacterial communities of New Zealand cicadas and their interspecific hybrids.
Haji D, Vailionis J, Stukel M, Gordon E, Lemmon EM, Lemmon AR, Simon C
Scientific reports (2022) 12(1):20559 PMC4151186 10.5344/ajev.2007.58.2.211 - Gut microbiome insights from 16S rRNA analysis of 17-year periodical cicadas (Hemiptera: Magicicada spp.) Broods II, VI, and X.
Brumfield KD, Raupp MJ, Haji D, Simon C, Graf J, Cooley JR, Janton ST, Meister RC, Huq A, Colwell RR, Hasan NA
Scientific reports (2022) 12(1):16967 PMC4021573 10.2307/1942268 - Detecting and Removing Sample Contamination in Phylogenomic Data: An Example and its Implications for Cicadidae Phylogeny (Insecta: Hemiptera).
Owen CL, Marshall DC, Wade EJ, Meister R, Goemans G, Kunte K, Moulds M, Hill K, Villet M, Pham TH, Kortyna M, Lemmon EM, Lemmon AR, Simon C
Systematic biology (2022) 71(6):1504-1523 10.1093/sysbio/syac043 - Thirteen new species of Chilecicada Sanborn, 2014 (Hemiptera: Auchenorrhyncha: Cicadidae: Tibicininae) expand the highly endemic cicada fauna of Chile.
Sanborn AF, Cole JA, Stukel M, Ukasik P, Veloso C, Gonzalez VA, Karkar JB, Simon C
Zootaxa (2022) 5078(1):170 10.11646/zootaxa.5078.1.1 2021
- Advances in the Evolution and Ecology of 13- and 17-Year Periodical Cicadas.
Simon C, Cooley JR, Karban R, Sota T
Annual review of entomology (2021) 67:457-482 10.1146/annurev-ento-072121-061108 2020
- An Evolving View of Phylogenetic Support.
Simon C
Systematic biology (2020) 71(4):921-928 10.1093/sysbio/syaa068 2019
- Psychoactive plant- and mushroom-associated alkaloids from two behavior modifying cicada pathogens.
Boyce GR, Gluck-Thaler E, Slot JC, Stajich JE, Davis WJ, James TY, Cooley JR, Panaccione DG, Eilenberg J, De Fine Licht HH, Macias AM, Berger MC, Wickert KL, Stauder CM, Spahr EJ, Maust MD, Metheny AM, Simon C, Kritsky G, Hodge KT, Humber RA, Gullion T, Short DPG, Kijimoto T, Mozgai D, Arguedas N, Kasson MT
Fungal ecology (2019) 41:147-164 PMC6876628 10.1016/j.funeco.2019.06.002 - Mitochondrial Genomics Reveals Shared Phylogeographic Patterns and Demographic History among Three Periodical Cicada Species Groups.
Du Z, Hasegawa H, Cooley JR, Simon C, Yoshimura J, Cai W, Sota T, Li H
Molecular biology and evolution (2019) 36(6):1187-1200 PMC6526903 10.1093/molbev/msz051 2018
- One Hundred Mitochondrial Genomes of Cicadas.
Łukasik P, Chong RA, Nazario K, Matsuura Y, Bublitz AC, Campbell MA, Meyer MC, Van Leuven JT, Pessacq P, Veloso C, Simon C, McCutcheon JP
The Journal of heredity (2018) 110(2):247-256 PMC6784412 10.1093/jhered/esy068 - Changes in Endosymbiont Complexity Drive Host-Level Compensatory Adaptations in Cicadas.
Campbell MA, Łukasik P, Meyer MC, Buckner M, Simon C, Veloso C, Michalik A, McCutcheon JP
MBio (2018) 9(6): (PMC6234865) 10.1128/mBio.02104-18 - A molecular phylogeny of the cicadas (Hemiptera: Cicadidae) with a review of tribe and subfamily classification.
Marshall DC, Moulds M, Hill KBR, Price BW, Wade EJ, Owen CL, Goemans G, Marathe K, Sarkar V, Cooley JR, Sanborn AF, Kunte K, Villet MH, Simon C
Zootaxa (2018) 4424(1):1-64 10.11646/zootaxa.4424.1.1 - Triplicate parallel life cycle divergence despite gene flow in periodical cicadas.
Fujisawa T, Koyama T, Kakishima S, Cooley JR, Simon C, Yoshimura J, Sota T
Commun Biol (2018) 1:26 (PMC6123741) 10.1038/s42003-018-0025-7 - The periodical cicada four-year acceleration hypothesis revisited and the polyphyletic nature of Brood V, including an updated crowd-source enhanced map (Hemiptera: Cicadidae: ).
Cooley JR, Arguedas N, Bonaros E, Bunker G, Chiswell SM, DeGiovine A, Edwards M, Hassanieh D, Haji D, Knox J, Kritsky G, Mills C, Mozgai D, Troutman R, Zyla J, Hasegawa H, Sota T, Yoshimura J, Simon C
PeerJ (2018) 6:e5282 (PMC6074776) 10.7717/peerj.5282 2017
- Multiple origins of interdependent endosymbiotic complexes in a genus of cicadas.
Łukasik P, Nazario K, Van Leuven JT, Campbell MA, Meyer M, Michalik A, Pessacq P, Simon C, Veloso C, McCutcheon JP
Proc. Natl. Acad. Sci. U.S.A. (2017) 115(2):E226-E235 (PMC5777040) 10.1073/pnas.1712321115 - Idiosyncratic Genome Degradation in a Bacterial Endosymbiont of Periodical Cicadas.
Campbell MA, Łukasik P, Simon C, McCutcheon JP
Curr. Biol. (2017) 27(22):3568-3575.e3 10.1016/j.cub.2017.10.008 - The confounding effects of hybridization on phylogenetic estimation in the New Zealand cicada genus Kikihia.
Banker SE, Wade EJ, Simon C
Mol. Phylogenet. Evol. (2017) 116:172-181 10.1016/j.ympev.2017.08.009 - How the Aridification of Australia Structured the Biogeography and Influenced the Diversification of a Large Lineage of Australian Cicadas.
Owen CL, Marshall DC, Hill KBR, Simon C
Syst. Biol. (2017) 66(4):569-589 10.1093/sysbio/syw078 2016
- Complex within a Complex: Integrative Taxonomy Reveals Hidden Diversity in Cicadetta brevipennis (Hemiptera: Cicadidae) and Unexpected Relationships with a Song Divergent Relative.
Hertach T, Puissant S, Gogala M, Trilar T, Hagmann R, Baur H, Kunz G, Wade EJ, Loader SP, Simon C, Nagel P
PLoS ONE (2016) 11(11):e0165562 (PMC5112989) 10.1371/journal.pone.0165562 - Genomic divergence and lack of introgressive hybridization between two 13-year periodical cicadas support life cycle switching in the face of climate change.
Koyama T, Ito H, Fujisawa T, Ikeda H, Kakishima S, Cooley JR, Simon C, Yoshimura J, Sota T
Mol. Ecol. (2016) 25(21):5543-5556 10.1111/mec.13858 - The cicadas (Hemiptera: Cicadidae) of India, Bangladesh, Bhutan, Myanmar, Nepal and Sri Lanka: an annotated provisional catalogue, regional checklist and bibliography.
Price BW, Allan EL, Marathe K, Sarkar V, Simon C, Kunte K
Biodivers Data J (2016) (4):e8051 (PMC5018104) 10.3897/BDJ.4.e8051 - Progress, pitfalls and parallel universes: a history of insect phylogenetics.
Kjer KM, Simon C, Yavorskaya M, Beutel RG
J R Soc Interface (2016) 13(121): (PMC5014063) 10.1098/rsif.2016.0363 2015
- Inflation of Molecular Clock Rates and Dates: Molecular Phylogenetics, Biogeography, and Diversification of a Global Cicada Radiation from Australasia (Hemiptera: Cicadidae: Cicadettini).
Marshall DC, Hill KB, Moulds M, Vanderpool D, Cooley JR, Mohagan AB, Simon C
Syst. Biol. (2015) 65(1):16-34 10.1093/sysbio/syv069 - Genome expansion via lineage splitting and genome reduction in the cicada endosymbiont Hodgkinia.
Campbell MA, Van Leuven JT, Meister RC, Carey KM, Simon C, McCutcheon JP
Proc. Natl. Acad. Sci. U.S.A. (2015) 112(33):10192-9 (PMC4547289) 10.1073/pnas.1421386112 - Molecular phylogenetics, diversification, and systematics of Tibicen Latreille 1825 and allied cicadas of the tribe Cryptotympanini, with three new genera and emphasis on species from the USA and Canada(Hemiptera: Auchenorrhyncha: Cicadidae).
Hill KB, Marshall DC, Moulds MS, Simon C
Zootaxa (2015) 3985(2):219-51 10.11646/zootaxa.3985.2.3 - Isolation and characterization of microsatellite markers useful for exploring introgression among species in the diverse New Zealand cicada genus Kikihia.
Wade EJ, Simon C
J. Insect Sci. (2015) 15: (PMC4535467) 10.1093/jisesa/iev016 2014
- Sympatric speciation in a bacterial endosymbiont results in two genomes with the functionality of one.
Van Leuven JT, Meister RC, Simon C, McCutcheon JP
Cell (2014) 158(6):1270-1280 10.1016/j.cell.2014.07.047 - The phylogenetic utility of acetyltransferase (ARD1) and glutaminyl tRNA synthetase (QtRNA) for reconstructing Cenozoic relationships as exemplified by the large Australian cicada Pauropsalta generic complex.
Owen CL, Marshall DC, Hill KB, Simon C
Mol. Phylogenet. Evol. (2014) 83:258-77 10.1016/j.ympev.2014.07.008 2013
- Independent divergence of 13- and 17-y life cycles among three periodical cicada lineages.
Sota T, Yamamoto S, Cooley JR, Hill KB, Simon C, Yoshimura J
Proc. Natl. Acad. Sci. U.S.A. (2013) 110(17):6919-24 (PMC3637745) 10.1073/pnas.1220060110 2012
- Limited, episodic diversification and contrasting phylogeography in a New Zealand cicada radiation.
Marshall DC, Hill KB, Marske KA, Chambers C, Buckley TR, Simon C
BMC Evol. Biol. (2012) 12:177 (PMC3537654) 10.1186/1471-2148-12-177 2011
- Hybridization, mitochondrial DNA phylogeography, and prediction of the early stages of reproductive isolation: lessons from New Zealand cicadas (genus Kikihia).
Marshall DC, Hill KB, Cooley JR, Simon C
Syst. Biol. (2011) 60(4):482-502 10.1093/sysbio/syr017 2009
- Allee effect in the selection for prime-numbered cycles in periodical cicadas.
Tanaka Y, Yoshimura J, Simon C, Cooley JR, Tainaka K
Proc. Natl. Acad. Sci. U.S.A. (2009) 106(22):8975-9 (PMC2690011) 10.1073/pnas.0900215106 - Glacial refugia in a maritime temperate climate: cicada (Kikihia subalpina) mtDNA phylogeography in New Zealand.
Marshall DC, Hill KB, Fontaine KM, Buckley TR, Simon C
Mol. Ecol. (2009) 18(9):1995-2009 - Selection for prime-number intervals in a numerical model of periodical cicada evolution.
Yoshimura J, Hayashi T, Tanaka Y, Tainaka K, Simon C
Evolution (2009) 63(1):288-94 10.1111/j.1558-5646.2008.00545.x 2008
- Steady Plio-Pleistocene diversification and a 2-million-year sympatry threshold in a New Zealand cicada radiation.
Marshall DC, Slon K, Cooley JR, Hill KB, Simon C
Mol. Phylogenet. Evol. (2008) 48(3):1054-66 10.1016/j.ympev.2008.05.007 2007
- Evidence for paternal leakage in hybrid periodical cicadas (Hemiptera: Magicicada spp.).
Fontaine KM, Cooley JR, Simon C
PLoS ONE (2007) 2(9):e892 (PMC1963320) 10.1371/journal.pone.0000892 - Accurate branch length estimation in partitioned Bayesian analyses requires accommodation of among-partition rate variation and attention to branch length priors.
Marshall DC, Simon C, Buckley TR
Syst. Biol. (2007) 55(6):993-1003 10.1080/10635150601087641 2006
- Differentiating between hypotheses of lineage sorting and introgression in New Zealand alpine cicadas (Maoricicada Dugdale).
Buckley TR, Cordeiro M, Marshall DC, Simon C
Syst. Biol. (2006) 55(3):411-25 10.1080/10635150600697283 - Reconstructing asymmetrical reproductive character displacement in a periodical cicada contact zone.
Cooley JR, Marshall DC, Hill KB, Simon C
J. Evol. Biol. (2006) 19(3):855-68 10.1111/j.1420-9101.2005.01056.x 2005
- Phylogeographic patterns of Hawaiian Megalagrion damselflies (Odonata: Coenagrionidae) correlate with Pleistocene island boundaries.
Jordan S, Simon C, Foote D, Englund RA
Mol. Ecol. (2005) 14(11):3457-70 10.1111/j.1365-294X.2005.02669.x 2003
- Molecular systematics and adaptive radiation of Hawaii's endemic Damselfly genus Megalagrion (Odonata: Coenagrionidae).
Jordan S, Simon C, Polhemus D
Syst. Biol. (2003) 52(1):89-109 10.1080/10635150390132803 2002
- Combined data, Bayesian phylogenetics, and the origin of the New Zealand cicada genera.
Buckley TR, Arensburger P, Simon C, Chambers GK
Syst. Biol. (2002) 51(1):4-18 10.1080/106351502753475844 1999
- CONVERGENT EVOLUTION OF COURTSHIP SONGS AMONG CRYPTIC SPECIES OF THE CARNEA GROUP OF GREEN LACEWINGS (NEUROPTERA: CHRYSOPIDAE: CHRYSOPERLA).
Henry CS, Wells MLM, Simon CM
Evolution (1999) 53(4):1165-1179 10.1111/j.1558-5646.1999.tb04530.x 0
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